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Report for CCDS21178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21178.1 Public Mus musculus 7 Siglece 23 108 98 CCDS HistoryNCBI Gene:83382Re-query CCDS DB by CCDS ID:21178.1Re-query CCDS DB by GeneID:83382See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032667.9 ENSMUSP00000032667.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032667.9Link to Ensembl Protein Viewer:ENSMUSP00000032667.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032667Re-query CCDS DB by Protein ID:ENSMUSP00000032667
Original member Current member NCBI NM_031181.2 NP_112458.2 Accepted alive Link to Nucleotide Sequence:NM_031181.2Link to Protein Sequence:NP_112458.2Re-query CCDS DB by Nucleotide ID:NM_031181Re-query CCDS DB by Protein ID:NP_112458Link to BLAST:NP_112458.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112458.2 467 Q91Y57 467 100% 0 0

Chromosomal Locations for CCDS 21178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43651486 43651689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43656092 43656173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43656526 43656619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43657538 43657795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43658973 43659020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43659210 43659488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43659694 43660132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGCTGCTGTTGCTGCTGCTGCTGCTGCTCTGGGGGATAAAGGGTGTGGAGGGTCAGAACCCCCAAGAGG
TTTTCACCCTGAATGTGGAAAGGAAGGTGGTGGTGCAGGAGGGCCTGTGTGTCCTTGTGCCCTGTAACTT
CTCCTATCTCAAGAAGAGGTTGACTGACTGGACTGACTCAGACCCAGTTCATGGATTCTGGTACAGGGAA
GGAACCGACAGACGCAAAGATTCCATCGTGGCCACAAATAACCCAATTCGTAAAGCAGTGAAGGAAACCC
GGAATCGATTCTTCCTGCTCGGAGACCCTTGGAGGAATGACTGCTCCCTGAACATCAGAGAGATCAGAAA
GAAGGATGCGGGGTTATACTTCTTTCGCCTGGAGCGTGGAAAAACAAAGTATAATTACATGTGGGACAAG
ATGACTCTGGTTGTAACAGCCCTCACTAACACCCCCCAAATTCTTCTCCCGGAGACGCTTGAAGCTGGCC
ATCCCAGCAACCTGACCTGCTCTGTGCCTTGGGACTGTGGGTGGACGGCACCTCCCATCTTCTCCTGGAC
TGGTACCTCTGTGTCATTTTTGAGCACCAACACTACGGGTTCCTCAGTGCTAACCATCACCCCTCAGCCT
CAGGACCATGGCACCAACCTCACTTGTCAGGTGACCCTGCCTGGAACTAATGTGTCCACAAGAATGACCA
TCCGTCTCAACGTGTCATATGCTCCAAAGAATCTGACTGTGACCATCTATCAAGGAGCTGACTCAGTTTC
CACAATCCTGAAGAATGGCTCATCTCTTCCTATCTCTGAGGGCCAGTCACTGCGTCTCATCTGCAGCACC
GACAGCTATCCCCCTGCGAACCTAAGCTGGTCCTGGGATAACCTGACCCTGTGCCCATCAAAGTTGTCCA
AGCCCGGGCTCCTGGAGCTGTTTCCAGTGCATCTTAAGCACGGAGGAGTGTATACCTGCCAAGCTCAACA
TGCCCTGGGCTCCCAACACATTTCCTTGAGCCTGTCTCCACAGAGCAGTGCAACTTTATCTGAAATGATG
ATGGGGACCTTTGTGGGTTCAGGAGTCACAGCCCTCCTTTTCCTGTCTGTCTGCATCCTCCTCCTGGCAG
TAAGATCCTACAGGAGGAAACCAGCCAGGCCAGCTGTGGTAGCTCCGCACCCAGATGCCCTCAAGGTCTC
AGTTTCTCAGAATCCCCTGGTTGAATCCCAGGCAGATGACAGCTCTGAGCCCCTGCCTTCCATACTTGAG
GCGGCCCCCTCCTCCACAGAGGAAGAGATACATTATGCGACCCTCAGCTTTCACGAGATGAAGCCCATGA
ACCTGTGGGGGCAACAGGACACTACCACGGAGTACTCAGAGATAAAGTTTCCACAAAGGACCGCATGGCC
ATGA

Translation (467 aa):
MLLLLLLLLLWGIKGVEGQNPQEVFTLNVERKVVVQEGLCVLVPCNFSYLKKRLTDWTDSDPVHGFWYRE
GTDRRKDSIVATNNPIRKAVKETRNRFFLLGDPWRNDCSLNIREIRKKDAGLYFFRLERGKTKYNYMWDK
MTLVVTALTNTPQILLPETLEAGHPSNLTCSVPWDCGWTAPPIFSWTGTSVSFLSTNTTGSSVLTITPQP
QDHGTNLTCQVTLPGTNVSTRMTIRLNVSYAPKNLTVTIYQGADSVSTILKNGSSLPISEGQSLRLICST
DSYPPANLSWSWDNLTLCPSKLSKPGLLELFPVHLKHGGVYTCQAQHALGSQHISLSLSPQSSATLSEMM
MGTFVGSGVTALLFLSVCILLLAVRSYRRKPARPAVVAPHPDALKVSVSQNPLVESQADDSSEPLPSILE
AAPSSTEEEIHYATLSFHEMKPMNLWGQQDTTTEYSEIKFPQRTAWP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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