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Report for CCDS21146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21146.1 Public Mus musculus 7 Slc7a10 23 108 98 CCDS HistoryNCBI Gene:53896Re-query CCDS DB by CCDS ID:21146.1Re-query CCDS DB by GeneID:53896See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001854.11 ENSMUSP00000001854.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001854.11Link to Ensembl Protein Viewer:ENSMUSP00000001854.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001854Re-query CCDS DB by Protein ID:ENSMUSP00000001854
Original member Current member NCBI NM_017394.4 NP_059090.3 Accepted alive Link to Nucleotide Sequence:NM_017394.4Link to Protein Sequence:NP_059090.3Re-query CCDS DB by Nucleotide ID:NM_017394Re-query CCDS DB by Protein ID:NP_059090Link to BLAST:NP_059090.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059090.3 530 P63115 530 100% 0 0

Chromosomal Locations for CCDS 21146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 35186482 35186650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35195087 35195291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35197215 35197366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35197602 35197727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35197798 35197951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35198631 35198754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35198836 35198939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35199225 35199321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35199540 35199689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35200276 35200453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35200718 35200851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGAGGCGGGACAGCGACATGGCAAGCCACATACAACAGCCAGGCGGGCACGGGAACCCCGGCCCTGCGC
CCTCGCCTTCCCCGGGCCCTGGTCCCGGCCCGGGCGCCTCGGAGCGGGTGGCACTCAAGAAAGAGATCGG
GCTGGTGAGCGCTTGCACCATCATCATCGGGAACATCATTGGCTCAGGCATCTTCATCTCACCCAAGGGT
GTCCTGGAACACTCGGGCTCCGTGGGTTTGGCCCTCTTCGTCTGGGTCCTGGGTGGGGGCGTGACAGCTC
TGGGCTCTCTCTGCTATGCAGAGCTGGGTGTCGCCATCCCCAAGTCTGGTGGGGACTACGCCTATGTCAC
TGAGATCTTCGGGGGCCTGGCTGGATTCCTACTGCTCTGGAGTGCTGTCCTCATCATGTACCCCACCAGC
CTGGCTGTCATCTCCATGACCTTCTCCAACTATGTGCTTCAGCCTGTCTTTCCCAACTGTATCCCCCCAG
CCACAGCCTCTCGAGTACTCTCCATGGCCTGCCTGATGCTCCTGACGTGGGTGAACAGCTCCAGCGTACG
CTGGGCCACGCGCATCCAGGTTATCTTCACTGGTGGGAAGCTGCTGGCGCTGTCTCTCATCATCACTGTT
GGCTTTGTCCAGATCTTCCAAGGACACTTTGAAGAGCTGAGACCCACCAATGCCTTCGCCTTCTGGATGA
CACCGTCTGTGGGTCACCTGGCCCTGGCTTTCCTCCAAGGTTCTTTTGCCTTCAGTGGCTGGAACTTCCT
CAACTATGTCACGGAGGAGCTGGTTGACCCACGCAAGAACCTACCTCGTGCCATCTTCATTTCCATCCCA
CTGGTCACCTTTGTGTACACATTCACCAATGTCGCCTACTTCACTGCCATGTCCCCCCAGGAGTTGCTGT
CCTCCAACGCCGTGGCGGTGACCTTCGGCGAGAAGCTGCTGGGCTACTTTTCGTGGGTCATGCCCGTCTC
TGTGGCCCTCTCTACTTTTGGAGGGATCAATGGCTACCTGTTCACCTCATCCAGGCTATGCTTCTCTGGA
GCCCGAGAGGGACACTTACCCAGCTTCCTGGCCATGATTCATGTCAGACGCTGCACCCCAATCCCTGCCC
TCCTTGTCTGTTGCGGGGCCACAGCGGTCATCATGCTCGTGGGTGACACATACACACTCATCAACTATGT
GTCCTTCATCAACTACCTCTGCTACGGAGTCACTATCCTGGGCCTGCTTGTGCTGCGCTGGAGACGGCCG
GCACTCCACAGGCCCATTAAGGTGAACCTCCTCGTTCCTGTTGTGTACTTGGTGTTCTGGGCATTCCTAC
TGGTCTTCAGCTTCATCTCGGAGCCCATGGTCTGTGGGGTCGGCATCATCATTATCCTCACTGGGGTTCC
CATCTTCTTCCTGGGAGTGTTCTGGAGAAGCAAACCAAAGTGTGTACACAGATTCACAGAGTCCATGACA
CGCTGGGGCCAGGAGCTGTGTTTCGTGGTTTACCCCCAGGGCTCCCTAGAGGAGGAGGAAAATGGCCCCA
TGGGCCAGCCCTCCCCATTGCCCATCACGGACAAGCCCTTGAAGACACAATGA

Translation (530 aa):
MRRDSDMASHIQQPGGHGNPGPAPSPSPGPGPGPGASERVALKKEIGLVSACTIIIGNIIGSGIFISPKG
VLEHSGSVGLALFVWVLGGGVTALGSLCYAELGVAIPKSGGDYAYVTEIFGGLAGFLLLWSAVLIMYPTS
LAVISMTFSNYVLQPVFPNCIPPATASRVLSMACLMLLTWVNSSSVRWATRIQVIFTGGKLLALSLIITV
GFVQIFQGHFEELRPTNAFAFWMTPSVGHLALAFLQGSFAFSGWNFLNYVTEELVDPRKNLPRAIFISIP
LVTFVYTFTNVAYFTAMSPQELLSSNAVAVTFGEKLLGYFSWVMPVSVALSTFGGINGYLFTSSRLCFSG
AREGHLPSFLAMIHVRRCTPIPALLVCCGATAVIMLVGDTYTLINYVSFINYLCYGVTILGLLVLRWRRP
ALHRPIKVNLLVPVVYLVFWAFLLVFSFISEPMVCGVGIIIILTGVPIFFLGVFWRSKPKCVHRFTESMT
RWGQELCFVVYPQGSLEEEENGPMGQPSPLPITDKPLKTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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