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Report for CCDS21112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21112.1 Public Mus musculus 7 Ffar3 23 108 98 CCDS HistoryNCBI Gene:233080Re-query CCDS DB by CCDS ID:21112.1Re-query CCDS DB by GeneID:233080See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094583.1 ENSMUSP00000092163.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094583.1Link to Ensembl Protein Viewer:ENSMUSP00000092163.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000094583Re-query CCDS DB by Protein ID:ENSMUSP00000092163
Original member Current member EBI ENSMUST00000185748.1 ENSMUSP00000140252.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185748.1Link to Ensembl Protein Viewer:ENSMUSP00000140252.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185748Re-query CCDS DB by Protein ID:ENSMUSP00000140252
Original member Current member NCBI NM_001033316.2 NP_001028488.1 Accepted alive Link to Nucleotide Sequence:NM_001033316.2Link to Protein Sequence:NP_001028488.1Re-query CCDS DB by Nucleotide ID:NM_001033316Re-query CCDS DB by Protein ID:NP_001028488Link to BLAST:NP_001028488.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028488.1 319 Q3UFD7 319 100% 0 0

Chromosomal Locations for CCDS 21112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30854934 30855893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGGGACAAGCTTCTTTCTTGGCAATTACTGGCTTTTCTTTTCCGTCTACCTGTTGGTGTTCCTCGTGG
GACTCCCCCTCAACGTGATGGCCCTGGTGGTCTTCGTGGGCAAGCTGCGCCGACGCCCAGTGGCTGTGGA
CTTACTTTTGCTAAACCTGACCATTTCGGACCTGCTCCTGCTCCTCTTCCTGCCGTTTCGCATGGTGGAG
GCAGCATGTGGCATGAGATGGCTTCTGCCCTTCATCTTCTGCCCCCTTTCTGGGTTCCTTTTCTTCACCA
CTATTTACCTCACCTCCCTCTTCCTGACGGCGGTGAGCATCGAACGTTTTCTGAGCGTGGCCTATCCACT
GTGGTACAAAACCCGGCCCCGGCTGGCCCAGGCTGGTCTGGTCAGTGTAGTCTGTTGGTTCCTGGCATCG
GCTCACTGTAGTGTGGTTTACATCACTGAATACTGGGGAAATGCAACCTACAGCCAGGGGACCAATGGAA
CCTGCTACCTGGAATTCCGGGAGGACCAGCTGGCCATCCTCCTGCCTGTACGACTAGAGATGGCTGTGGT
CCTTTTCATGGTGCCCCTGTGTATCACGAGTTACTGCTACAGTCGCCTGGTGTGGATACTGAGCCGGGGG
GCCAGCCGGCGCCGGCGCAAGAGGATAATGGGGCTTCTTGCAGCCACACTGCTCATCTTCTTCGTCTGCT
TCGGCCCCTATAATATGTCCCATGTGGTGGGCTATGTCAGCCGTGAGAGTCCGTCCTGGCGGAGCTACGT
GCTCCTCCTCAGCACCCTCAACTCTTGTATCGACCCCCTGGTTTTCTACTTTTCTTCCTCCAAGTTCCAA
GCCGACTTTCATCAACTCCTGGGGAGGCTGCTCAGAACTTGTGTGCCTTGGACTCAGCAAGTCAGCCTGG
AACTGAAGGTAAAGAATGGAGAAGAGCCATCCAAGGAGTGTCCGAGCTAG

Translation (319 aa):
MGTSFFLGNYWLFFSVYLLVFLVGLPLNVMALVVFVGKLRRRPVAVDLLLLNLTISDLLLLLFLPFRMVE
AACGMRWLLPFIFCPLSGFLFFTTIYLTSLFLTAVSIERFLSVAYPLWYKTRPRLAQAGLVSVVCWFLAS
AHCSVVYITEYWGNATYSQGTNGTCYLEFREDQLAILLPVRLEMAVVLFMVPLCITSYCYSRLVWILSRG
ASRRRRKRIMGLLAATLLIFFVCFGPYNMSHVVGYVSRESPSWRSYVLLLSTLNSCIDPLVFYFSSSKFQ
ADFHQLLGRLLRTCVPWTQQVSLELKVKNGEEPSKECPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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