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Report for CCDS21107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21107.1 Under review, withdrawal Mus musculus 7 2200002J24Rik 23 108 98 CCDS HistoryNCBI Gene:69147Re-query CCDS DB by CCDS ID:21107.1Re-query CCDS DB by GeneID:69147See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013227.7 ENSMUSP00000013227.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013227.7Link to Ensembl Protein Viewer:ENSMUSP00000013227.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000013227Re-query CCDS DB by Protein ID:ENSMUSP00000013227
Original member Current member NCBI NM_026961.2 NP_081237.1 Accepted alive Link to Nucleotide Sequence:NM_026961.2Link to Protein Sequence:NP_081237.1Re-query CCDS DB by Nucleotide ID:NM_026961Re-query CCDS DB by Protein ID:NP_081237Link to BLAST:NP_081237.1

Chromosomal Locations for CCDS 21107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30699783 30699980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30700246 30700380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGGGGGTTGGGACCAAAATCAAGAACCTGGAAGCCCAGATCGCATCAGTGCAACCGGCCTATCAGAGAT
TGCCCAGGTCAGAGACAGTCATGCTGATTGCCTTGCCTGCCCCAGCGAAGGATTACCTCTGTCTGTCCAT
CACAGCCTTCTGCTTCTGCATCCTGCTGGCGATTCCAGCCCTGCTGTTCTCCCTTAAGACCCGGGAAGCC
AACTCTGTTGGAGATTGGAGGCGAGCCCAGAGGAACTCCACGCTGGCCTTGGGCTTCGGTGTCTCCAGCA
TCCTTGTGGGATGCATTTTGATGGCCAGCTCTATTAGATTAATTAGTCTTTGA

Translation (110 aa):
MGVGTKIKNLEAQIASVQPAYQRLPRSETVMLIALPAPAKDYLCLSITAFCFCILLAIPALLFSLKTREA
NSVGDWRRAQRNSTLALGFGVSSILVGCILMASSIRLISL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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