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Report for CCDS21045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21045.1 Public Mus musculus 7 Lrfn1 23 108 98 CCDS HistoryNCBI Gene:80749Re-query CCDS DB by CCDS ID:21045.1Re-query CCDS DB by GeneID:80749See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21045.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055110.10 ENSMUSP00000057645.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055110.10Link to Ensembl Protein Viewer:ENSMUSP00000057645.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000055110Re-query CCDS DB by Protein ID:ENSMUSP00000057645
Original member Current member EBI ENSMUST00000189877.6 ENSMUSP00000139609.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189877.6Link to Ensembl Protein Viewer:ENSMUSP00000139609.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189877Re-query CCDS DB by Protein ID:ENSMUSP00000139609
Original member NCBI NM_030562.2 NP_085039.2 Updated not alive Link to Nucleotide Sequence:NM_030562.2Link to Protein Sequence:NP_085039.2Re-query CCDS DB by Nucleotide ID:NM_030562Re-query CCDS DB by Protein ID:NP_085039
Current member NCBI NM_030562.3 NP_085039.2 Accepted alive Link to Nucleotide Sequence:NM_030562.3Link to Protein Sequence:NP_085039.2Re-query CCDS DB by Nucleotide ID:NM_030562Re-query CCDS DB by Protein ID:NP_085039Link to BLAST:NP_085039.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085039.2 492 Q2WF71-2 492 100% 0 0

Chromosomal Locations for CCDS 21045.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28458658 28460063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28461995 28462067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGCTCCAGGCCCCTTCTCCTCCGGGCTCTTTTCGCCACCACCTGCTGCTCTTCCCTTTCTGCTGTTGC
TCTGGGCAGGAGCATCTCGAGGCCAGCCCTGCCCTGGTCGCTGCATCTGTCAGAACGTGGCACCTACGCT
GACCATGCTGTGTGCGAAGACGGGCCTGCTCTTTGTGCCACCCGCCATCGACAGGCGTGTGGTAGAGCTG
CGGCTCACTGACAACTTCATTGCGGCTGTGCGTCGTCGAGACTTCGCCAATATGACCAGCCTGGTCCACC
TCACCCTGTCTCGCAACACCATTGGCCAGGTAGCAGCCGGCGCCTTTGCTGACCTCCGGGCTCTCCGGGC
CCTGCACCTTGACAGCAACCGCCTGGCAGAGGTGCGAGGGGATCAGCTCCGGGGCTTGGGTAACCTCCGC
CACTTGATCCTCGGCAACAATCAGATCCGTAAGGTGGAGTCGGCAGCCTTTGACGCCTTCCTGTCCACCG
TGGAGGACCTGGATCTATCCTACAACAACCTGGAGGCACTGCCATGGGAGGCGGTGGGTCAGATGGTGAA
CTTGAACACCCTCACGCTGGACCACAACCTCATTGATCACATTGCGGAGGGCACCTTCGTGCAGCTGCAC
AAACTCGTGCGCTTGGACATGACCTCCAACCGTCTACATAAATTGCCCCCCGACGGACTGTTCCTGAGGT
CCCAGGGCGGTGGGCCCAAGCCACCCACCCCATTGACGGTCAGCTTCGGTGGCAACCCGCTGCACTGCAA
CTGTGAACTGCTCTGGCTTCGGCGCCTGACCAGGGAGGACGACTTGGAGACGTGTGCCACGCCCGAGCAT
CTCACTGACCGCTATTTCTGGTCCATCCCGGAGGAGGAATTTCTATGTGAGCCCCCGCTCATCACACGGC
AAGCAGGGGGCCGGGCCCTGGTGGTAGAGGGCCAGGCTGTCAGTCTGCGCTGCCGGGCTGTGGGTGACCC
CGAGCCCGTGGTGCATTGGGTGGCACCTGATGGACGGCTGCTGGGGAACTCCAGCCGGACTCGGGTCCGT
GGTGACGGAACGCTGGATGTGACTATCACCACCCTGAGGGACAGCGGTACCTTCACTTGCATAGCCTCCA
ATGCTGCGGGGGAAGCCACAGCACCTGTGGAGGTATGTGTGGTACCTCTGCCACTGATGGCGCCCCCACC
CGCTGCCCCGCCGCCTCTCACTGAACCTGGTTCTTCTGACATCGCCACACCAGGCAGACCTGGTGCCAAC
GACTCAACCAGTGAGCGCAGGCTTGTGGCTGCTGAACTCACGTCTAGCTCTGTGCTCATCCGCTGGCCGG
CCCAGAGGCCAGTGCCTGGCATCCGTATGTACCAAGTGCAATACAACAGCTCTGCAGATGACTCCCTAGT
CTACAGTTCTAGCTGTCCTGGAACTCACTATGTAGACCAGGATGGCCTTGAAATCAGAGTGCCGCTTGCT
TCTGCCTGA

Translation (492 aa):
MAPGPFSSGLFSPPPAALPFLLLLWAGASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVPPAIDRRVVEL
RLTDNFIAAVRRRDFANMTSLVHLTLSRNTIGQVAAGAFADLRALRALHLDSNRLAEVRGDQLRGLGNLR
HLILGNNQIRKVESAAFDAFLSTVEDLDLSYNNLEALPWEAVGQMVNLNTLTLDHNLIDHIAEGTFVQLH
KLVRLDMTSNRLHKLPPDGLFLRSQGGGPKPPTPLTVSFGGNPLHCNCELLWLRRLTREDDLETCATPEH
LTDRYFWSIPEEEFLCEPPLITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRVR
GDGTLDVTITTLRDSGTFTCIASNAAGEATAPVEVCVVPLPLMAPPPAAPPPLTEPGSSDIATPGRPGAN
DSTSERRLVAAELTSSSVLIRWPAQRPVPGIRMYQVQYNSSADDSLVYSSSCPGTHYVDQDGLEIRVPLA
SA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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