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Report for CCDS21040.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21040.2 Public Mus musculus 7 Plekhg2 23 108 98 CCDS HistoryNCBI Gene:101497Re-query CCDS DB by CCDS ID:21040.2Re-query CCDS DB by GeneID:101497See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21040.2
The coding region has been updated to represent an alternative 5' splice pattern, resulting in the extension of the N-terminus to one that is better supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21040.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094644.10 ENSMUSP00000092228.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094644.10Link to Ensembl Protein Viewer:ENSMUSP00000092228.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094644Re-query CCDS DB by Protein ID:ENSMUSP00000092228
Original member NCBI NM_138752.2 NP_620091.2 Updated not alive Link to Nucleotide Sequence:NM_138752.2Link to Protein Sequence:NP_620091.2Re-query CCDS DB by Nucleotide ID:NM_138752Re-query CCDS DB by Protein ID:NP_620091
Current member NCBI NM_138752.3 NP_620091.2 Accepted alive Link to Nucleotide Sequence:NM_138752.3Link to Protein Sequence:NP_620091.2Re-query CCDS DB by Nucleotide ID:NM_138752Re-query CCDS DB by Protein ID:NP_620091Link to BLAST:NP_620091.2

Chromosomal Locations for CCDS 21040.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28359805 28361261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28361808 28362708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28362826 28362999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28364298 28364314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28364471 28364509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28364585 28364632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28364725 28364826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28364917 28364950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28365282 28365368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28365453 28365545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28367635 28367835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28367974 28368111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28368291 28368441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28368679 28368725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28368821 28368887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28370061 28370161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28370238 28370497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28371115 28371223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4026 nt):
ATGCCCGAGGGAGCCCGGGGATTGAGCCTGCCCAAACCCAGCCTTAGGCTCGGGTGTGGCCACCAAGGTG
AAGTTTGCGACTGCGCAGCAGTGAGTGACACTCCAACAGCAGCGCAGGCAGCCACCACCATGGCTTCTCC
AAGGGGTTCTGGCAGCTCCACTTCGTTGAGCACTGTGGGCTCCGAGGGGGACCCATCTCCAGCCTGCTCA
GCCTCCAGGCCAGAGCCCCTACCGGAGCCCCCCATACGCCTGCACCTGTTGCCTGTGGGAATCCAGGGTT
CGGTGAAACCCTCCAGGCTGGAACGAGTGGCCAGGGAGATTGTGGAGACAGAGCGGGCGTATGTTCGCGA
CCTTCGCAGCATCGTGGAGGACTACCTAGGCCCTCTGATGGATGGCAGGGCCCTGGGGCTGAACATGGAG
CAGGTGGGCACACTGTTTGCCAACATCGAGGACATCTATGAGTTTAGCAGTGAGCTCCTGGAGGACTTGG
AAGGCTGCAGCAGTGCAGGGGGCATCGCCGAGTGCTTCGTGCAAAGAAGCGAAGATTTTGACATCTATAC
ATTGTACTGCATGAACTACCCAAGCTCCCTGGCCCTGCTCCGAGAGCTGTCAGTGTCCCCGCCAGCCACT
CTGTGGCTACAGGAGCGTCAGGCCCAGCTCCGTCACTCCCTGCCTCTGCAGAGCTTCTTGCTGAAGCCTG
TTCAGCGCATCCTGAAGTACCATCTCCTGCTGCAGGAACTGGGCAAGCACTGGGCAGAGGGCCCAGACAG
TGGAGGGCGAGAGATGGTGGAGGAAGCCATTGTATCCATGACTGCAGTGGCCTGGTACATCAATGACATG
AAGCGCAAGCAAGAGCATGCTGCACGCCTGCAGGAAGTGCAGCGGAGGCTGGGTGGCTGGACTGGCCCGG
AGCTCAGCGCCTTTGGAGAGCTAGTACTGGAAGGCACTTTCCGAGGGGGAGGCGGGGGAGGCCCCAGGCT
TCGTGGGGGTGAGCGCCTCCTCTTCTTGTTCTCCCGGATGCTGCTGGTTGCCAAGCGTCGGGGGCCTGAA
TACACCTACAAGGGCCACATCTTTTGCTGTAACCTCAGCGTAAGCGAGACTCCGCGGGACCCCTTAGGAT
TTAAGGTGTCAGACCTGACCATCCCCAAGCACAGACACCTGTTCCAGGCCAAGAACCAGGAAGAGAAACG
GCTGTGGATCCACTGTCTCCAGCGCCTCTTCTTTGAGAACCACCCGGCTTCCATCCCTGCCAAGGCAAAG
CAAGTTCTCTTGGAAAACAGCCTACATTGTGCTCCAAAGAGCAAACATATCCCAGAACCCCCAACATCCC
CACTGGACTCTCCCCGACCTCGAGATGCTCCAGGTTTTACCCCCGGCAGAAGAAACCCAGCTCCATCTCC
AAGACTTTCTGGCAGTCGCCGTGGCCGCAGGCAGTCTGAGCCAGCAAAGGAAGCTTATGTCATTTTTCCC
CAGAATGATAAGCCTCAAGTCAAGCATGCTGGCAGTGAAGGAGAGCTCCACCCCTCATCTGAGCTGCAGC
CAGTGTCTGCTTCTGGCCCTCCTGAAGACCTGGAGGATGCTGGGCCTCCCACGTTGGACCCGTCGGGGAC
TTCCATAACTGAGGAGATCCTAGAACTGCTGAACCAGAGAGGCCTCAGGGACTCGGGGCCAGCCACCCAC
GACATTCCCAAGTTCCCCAGAGACTCCCGGGTGCCAGTTGAAAGCGAACCCCTCCCGTTCCAATCCCTGC
CCAGCCGAGAGTCTTCAGAAGAGGAGGAGGAGGAGGACCTGGAGACAGATGAACGCGAGCCTTCCCCACT
GCACGTCTTAGAGGGGCTGGAAGGTTCGAGCGCAGCTGAAATTCCCTGCATTCCCAGCCTTACTGACATT
CCCAGTGAAGTGCCCAGCCTTCCAGAAATTCCTGAGGCTCCCTGCCTTCCCTGTCTCTCTGATATCTCTG
GTGTTTTTGAGGTACCCTGCCTTTCACCCACATCCACTGTGCCTGACATTCCCAGCTTGGCCACCACCCC
CTCCTTTCCCTGTGGCTCCTGGCTCCCTGGACCCCTGCAGGAGGCAGCCCAGCCTCAAGCCACCAGGAGG
GAACTGTTGAGTGGGAGCAATCCAGGAAGACTGAGTGAGTCCCCCTCAGAAAGCAGAGAGGGGCAGGAGG
ATGACACAGAAGGCGTGTCATTCTCAGCTGTGCAGAGGGAGGCTGGCACCTCGGTCCAAGGATTCCCGGA
AGAACTGGAATACCGCTCTTGTTCAGAAATCCGGAGTGCCTGGCAAGCTCTGGAGCAGGGGCAGCTGGCC
CGGCCTGGCTTCCCAGAACCTCTGCTCATCCTGGAGGACTCTGATCTTAGAGGAGGCAGCACCAGCGGGA
AGACAGGAATGCCACATTCAGAGCGGTCAGCATCGCGGGTGCGAGAGTTGGCTCGGCTCTACAGTGAGCG
TATCCAGCAGATGCAACGAGCTGAGACTAGGGCATCCACCAATGCACCCCGCCGCAGACCTCGAGTCCTG
GCCCAACCCCAGCCATCCCCTTGCCCACCCCAGGAAGAGGCTGAACCAGGGGCCCTGCCTGCATTTGGAC
ATGTGCTTGTATGTGAGCTGGCTTTCCCACTGAACTGCACCCAGGAGTCTGTCCCTCTGGGCCCTGCTGT
TCTGGTTCAAGCTGCCACACCTTTGTGTATTCAAGGAGATGACCTGAGTGGCCAGAATCTAAATGTTTCA
GATTTGTCCAAGCAAGGCCATCTGAGTAGTAACTCCATTCCACCGCCTGTCCCTTTACCTGGGCAAAGCA
ACTTCCAGAACATACAGGTTCCCTCTACATCCCTTTTGCCTAAGCAAGAGCCTCCAGATGTCCAGGTCCC
AACTGCCTCAACCTTGCCTGATACAAGCCAGCTCCAAAGCCAAGTTCCCGCTGCCACTCCATCAGCTGGG
CATAGAAACTGTGTGGAGATCCAGGTTCAGTCCACCACCTCCCTTCCTGGCCAAGAGTGTCAGGCAGACA
CTGTGGCATTGTCCAAGCAAGAAGGTCATGAAGACAGCCAGAACCCAAACAAGGCCCCAGGAGCCGAGCA
AAGAGACGTCAGCATTGATCAGGGTCTAGCTGTTGTTGGTGGCCGGCCTGTCAGCCCTTTGCCAGTGTGC
ACAAGTAGCCCTGACCAGCAGATCCCAGCCACCACCCCACTGCCATTGTCAACTGACTTCCCAGACATGG
AGGGTCCTGGTGCCTTACCTCTGCCCACACAGGAAGGTCGTCCGGACTGCAGCATCCCATGCAACCCTCT
ACCATCTTTGTCCCAAGACGTTCAGGTGCCAGCGGTCATCCCTGTGTCCCAGCTGCAAGGCCTTACAGAC
ACCAGGGCCACAGTGCCCCTGTCTTCCCACAAGCAGGAGGACGCTCCAGAGTGTCTGGGTCCAGAGCCCA
GCCTCACAGACACACCAGCTCCCAGACTCTTATCTTCACTGGGCCAACAGAACACCACAGATGGCCCTGT
TTCAGCAGCTGCCGTGCCTTTGACTGAACAAGGATGCTCTCAGGATCTGCAAGGCCTAATTACTTCCCCA
GTTCAGACAACCATGGAGTTACCCAAACCAAGGGGTTTAGTCTCTCGTGTTGCCACCTCAGAGTCTTTGG
ACTTGACCCCACCGCATAGCCCCTCGCTCTCCACTCGCCAGCTCCTGGGCCCCAGTGCAGCTGCCCTTTC
AAGGTACCTGGCAGCTTCATACATCAGCCAGAGCTTGGCTAGGCGCCAGGGACCTGGGGGAGAGGGCACG
GTAGCCTCCCAGGGTCACTGGTCCTCCTCTGCCCCCACATCACGGGCACCTTCACCACCACCTCAGCCCC
AGCCCCCAGCCCCTCCAGCCAGGAGGCTCAGCTATGCCACCACAGTTAGTATTCAGGTAGGAGGTGGTGG
GCGGCTACGACCAGCCAAAGCTCAGGTCCGGCTAAACCACCCTGCTCTCTTGGCAGCCCCTCACCCGGGA
GCCGTTGGGCCTTCCCAGGGCCCAGGAGGCTCCTGA

Translation (1341 aa):
MPEGARGLSLPKPSLRLGCGHQGEVCDCAAVSDTPTAAQAATTMASPRGSGSSTSLSTVGSEGDPSPACS
ASRPEPLPEPPIRLHLLPVGIQGSVKPSRLERVAREIVETERAYVRDLRSIVEDYLGPLMDGRALGLNME
QVGTLFANIEDIYEFSSELLEDLEGCSSAGGIAECFVQRSEDFDIYTLYCMNYPSSLALLRELSVSPPAT
LWLQERQAQLRHSLPLQSFLLKPVQRILKYHLLLQELGKHWAEGPDSGGREMVEEAIVSMTAVAWYINDM
KRKQEHAARLQEVQRRLGGWTGPELSAFGELVLEGTFRGGGGGGPRLRGGERLLFLFSRMLLVAKRRGPE
YTYKGHIFCCNLSVSETPRDPLGFKVSDLTIPKHRHLFQAKNQEEKRLWIHCLQRLFFENHPASIPAKAK
QVLLENSLHCAPKSKHIPEPPTSPLDSPRPRDAPGFTPGRRNPAPSPRLSGSRRGRRQSEPAKEAYVIFP
QNDKPQVKHAGSEGELHPSSELQPVSASGPPEDLEDAGPPTLDPSGTSITEEILELLNQRGLRDSGPATH
DIPKFPRDSRVPVESEPLPFQSLPSRESSEEEEEEDLETDEREPSPLHVLEGLEGSSAAEIPCIPSLTDI
PSEVPSLPEIPEAPCLPCLSDISGVFEVPCLSPTSTVPDIPSLATTPSFPCGSWLPGPLQEAAQPQATRR
ELLSGSNPGRLSESPSESREGQEDDTEGVSFSAVQREAGTSVQGFPEELEYRSCSEIRSAWQALEQGQLA
RPGFPEPLLILEDSDLRGGSTSGKTGMPHSERSASRVRELARLYSERIQQMQRAETRASTNAPRRRPRVL
AQPQPSPCPPQEEAEPGALPAFGHVLVCELAFPLNCTQESVPLGPAVLVQAATPLCIQGDDLSGQNLNVS
DLSKQGHLSSNSIPPPVPLPGQSNFQNIQVPSTSLLPKQEPPDVQVPTASTLPDTSQLQSQVPAATPSAG
HRNCVEIQVQSTTSLPGQECQADTVALSKQEGHEDSQNPNKAPGAEQRDVSIDQGLAVVGGRPVSPLPVC
TSSPDQQIPATTPLPLSTDFPDMEGPGALPLPTQEGRPDCSIPCNPLPSLSQDVQVPAVIPVSQLQGLTD
TRATVPLSSHKQEDAPECLGPEPSLTDTPAPRLLSSLGQQNTTDGPVSAAAVPLTEQGCSQDLQGLITSP
VQTTMELPKPRGLVSRVATSESLDLTPPHSPSLSTRQLLGPSAAALSRYLAASYISQSLARRQGPGGEGT
VASQGHWSSSAPTSRAPSPPPQPQPPAPPARRLSYATTVSIQVGGGGRLRPAKAQVRLNHPALLAAPHPG
AVGPSQGPGGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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