NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20879.1 Public Mus musculus 7 Mill2 23 108 98 CCDS HistoryNCBI Gene:243864Re-query CCDS DB by CCDS ID:20879.1Re-query CCDS DB by GeneID:243864See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072415.8 ENSMUSP00000072246.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072415.8Link to Ensembl Protein Viewer:ENSMUSP00000072246.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072415Re-query CCDS DB by Protein ID:ENSMUSP00000072246
Original member Current member EBI ENSMUST00000227379.1 ENSMUSP00000154222.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227379.1Link to Ensembl Protein Viewer:ENSMUSP00000154222.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227379Re-query CCDS DB by Protein ID:ENSMUSP00000154222
Original member Current member NCBI NM_153760.2 NP_715641.1 Accepted alive Link to Nucleotide Sequence:NM_153760.2Link to Protein Sequence:NP_715641.1Re-query CCDS DB by Nucleotide ID:NM_153760Re-query CCDS DB by Protein ID:NP_715641Link to BLAST:NP_715641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_715641.1 340 Q8HWE5-2 340 100% 0 0

Chromosomal Locations for CCDS 20879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 18839992 18840091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18855940 18856203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18856406 18856681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18858141 18858419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18858524 18858627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGAAAGCCAGTTCTGGAAAGCCCAGAGAATTCAGACCAGCAGTCCTACTGTTGATCTTAGGGCTGCTCC
TTAGAGACTCACGGGGATCCAGCATCCAAGGAACCCACACTCTGCGCTATAATGTCAGAGCCCATTCTCT
GGAGGGGTCTGAGAAGACCCAGCTCCTGGTCCTAATATACGTAGATGAAGAGCTCTTCCTGAAATACAAT
GGAGACAGCAGGGAGACAGAGCCCTTGGGATGCTGGATTAAGGGCCATGGGGGAAATGAGACCTGTGCAA
GAGAGACTAACAATCTGTTGAAGGTGGAAGAGAAACTCAGGGGGATGATGGCTGAGGTTATAAACCAGAA
GAGTCAGGAGGAAGGCCTTCACACTCTCCAGGCAACTTTGGGCTGTGAGCTTCTGAGTAATGGGAGCACT
AGAGGCTTCTGGCACCTGGGCTATGATGGGCAGAACTTCCTCACCTTTGACCAGAAGACTCTCACGTGGA
CAGTGGATGGACCCTCCACCCAGCAGAACAAGATGTTCTGGAAGACACATGCACCCAGAGCTGATCTAGT
TAAGACATTCTTGGATGATATATGTCCTGCTCACCTCCAGAGATACCTCGCTTCCTTGAGAAACGGTCTG
CAGGATACAGGACCCCCAATGGTAACTGTGACCTGCAGGAACTATCCAGTAGGTAGGGTCACACTGACAT
GCCGGGCTTTTAATCTGTATACCCGTGAGGCCACCCTGGTCTGGCTTCAGGATGGGAAGCCAGTACAGCA
GAAAACCTTCAGATCTGAGACCATCCTGCCCAGCGGGGATGGGACCTACCAGGCCCGGGTGTCCATTCGG
GTTCTTCCTGGACAGGAACCACAGTTCAGCTGCAACCTGAGGCATGGCAACCATAGCATCATGCAGACAG
CTGTCTCTGGGCATGCTGCTGAGGACAGTCAGGATGTTGCTAGCTCTGCTACAGCTTCAGCTGGATCTGC
ACTCCCTGTTGTATTGGCGGTGGCACTGGCCAGAGCCAACTGA

Translation (340 aa):
MKASSGKPREFRPAVLLLILGLLLRDSRGSSIQGTHTLRYNVRAHSLEGSEKTQLLVLIYVDEELFLKYN
GDSRETEPLGCWIKGHGGNETCARETNNLLKVEEKLRGMMAEVINQKSQEEGLHTLQATLGCELLSNGST
RGFWHLGYDGQNFLTFDQKTLTWTVDGPSTQQNKMFWKTHAPRADLVKTFLDDICPAHLQRYLASLRNGL
QDTGPPMVTVTCRNYPVGRVTLTCRAFNLYTREATLVWLQDGKPVQQKTFRSETILPSGDGTYQARVSIR
VLPGQEPQFSCNLRHGNHSIMQTAVSGHAAEDSQDVASSATASAGSALPVVLAVALARAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH