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Report for CCDS2085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2085.1 Public Homo sapiens 2 MALL 24 110 108 CCDS HistoryNCBI Gene:7851Re-query CCDS DB by CCDS ID:2085.1Re-query CCDS DB by GeneID:7851See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272462.3 ENSP00000272462.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272462.3Link to Ensembl Protein Viewer:ENSP00000272462.2Re-query CCDS DB by Nucleotide ID:ENST00000272462Re-query CCDS DB by Protein ID:ENSP00000272462
Original member Current member NCBI NM_005434.5 NP_005425.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005434.5Link to Protein Sequence:NP_005425.1Re-query CCDS DB by Nucleotide ID:NM_005434Re-query CCDS DB by Protein ID:NP_005425Link to BLAST:NP_005425.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005425.1 153 Q13021 153 100% 0 0

Chromosomal Locations for CCDS 2085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 110085695 110085757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110087572 110087697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110091603 110091770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 110115688 110115792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCCTCGCCCGACCCGCCCGCCACCAGCTACGCCCCGTCCGACGTGCCCTCGGGGGTCGCGCTGTTCC
TCACCATCCCTTTCGCCTTCTTCCTGCCCGAGCTGATATTTGGGTTCTTGGTCTGGACCATGGTAGCCGC
CACCCACATAGTATACCCCTTGCTGCAAGGATGGGTGATGTATGTCTCGCTCACCTCGTTTCTCATCTCC
TTGATGTTCCTGTTGTCTTACTTGTTTGGATTTTACAAAAGATTTGAATCCTGGAGAGTTCTGGACAGCC
TGTACCACGGGACCACTGGCATCCTGTACATGAGCGCTGCCGTCCTACAAGTACATGCCACGATTGTTTC
TGAGAAACTGCTGGACCCAAGAATTTACTACATTAATTCGGCAGCCTCGTTCTTCGCCTTCATCGCCACG
CTGCTCTACATTCTCCATGCCTTCAGCATCTATTACCACTGA

Translation (153 aa):
MASPDPPATSYAPSDVPSGVALFLTIPFAFFLPELIFGFLVWTMVAATHIVYPLLQGWVMYVSLTSFLIS
LMFLLSYLFGFYKRFESWRVLDSLYHGTTGILYMSAAVLQVHATIVSEKLLDPRIYYINSAASFFAFIAT
LLYILHAFSIYYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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