NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20814.1 Public Mus musculus 7 Zfp110 23 108 98 CCDS HistoryNCBI Gene:65020Re-query CCDS DB by CCDS ID:20814.1Re-query CCDS DB by GeneID:65020See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004614.14 ENSMUSP00000004614.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004614.14Link to Ensembl Protein Viewer:ENSMUSP00000004614.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000004614Re-query CCDS DB by Protein ID:ENSMUSP00000004614
Original member Current member EBI ENSMUST00000168247.1 ENSMUSP00000132060.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168247.1Link to Ensembl Protein Viewer:ENSMUSP00000132060.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168247Re-query CCDS DB by Protein ID:ENSMUSP00000132060
Original member Current member NCBI NM_001360576.1 NP_001347505.1 Accepted alive Link to Nucleotide Sequence:NM_001360576.1Link to Protein Sequence:NP_001347505.1Re-query CCDS DB by Nucleotide ID:NM_001360576Re-query CCDS DB by Protein ID:NP_001347505Link to BLAST:NP_001347505.1
Original member Current member NCBI NM_022981.5 NP_075357.4 Accepted alive Link to Nucleotide Sequence:NM_022981.5Link to Protein Sequence:NP_075357.4Re-query CCDS DB by Nucleotide ID:NM_022981Re-query CCDS DB by Protein ID:NP_075357Link to BLAST:NP_075357.4

Chromosomal Locations for CCDS 20814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12835483 12835527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12836293 12836419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12837089 12837184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12844432 12844905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12846796 12846896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12847972 12848098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12848397 12849925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2499 nt):
ATGGAGGACAGTATGGCTTCCACGCTTCCAACAACCTGGCCCCATGAGTCTGTGAAGTTTGAAGATGTAT
CTCTGACGTTTACCGAGGAAGAGTGGGCACAGCTGGACTTCCAACAGAAGTGCCTGTACAGGGAGATCAT
GATGGAGAACTACAGCAACATGATTTCAGTGGAGCATCACTTTTCAAAGCCAAATGTGATATCTCAGCTA
GAAAAAGCCGAAGACTGCTGGCCAATGCAGAGAGAAATTCCTCAAGATACTCTTCCAGAATGTTCTTGGC
CTTCTCCAGACCCTGGAATGAATTCCTTTCCTTCTAAGAGTCCCCTGATGAAGATCGAGGTTGTTGAGGT
CCTTACATTGAACAAGGATGTGGCTGGTCCTCGGAATGCCCTGATTCAATCCCTCTATCCAGAAGACTTG
AACCCAGGTAACCTCAAGCCAGCTCAACAGCCAAGCAAGCGTTTGACTGACACTGAAGCTTCTCGCCAGA
AGTTCCGACATTTCCAGTATGAAGAGTCAGCTGGTCCCCAGAAGGCTATGTCCCAGCTTCGTAAGCTGTG
TCACCAGTGGCTGCAGCCCAATACACGTTCAAAGAAGCAGATCCTAGAGTTGCTGGTGCTCGAGCAGTTC
CTGAATGCACTGCCTGAGAAGTTTCGGGTATGGGTAGAGTCGCAGCACCCAGAAGATTGCAAAGCAGTGG
TGGCTTTGTTGGAGAATATGACCTCGGTGTCTAAGGACGATGCTTCGCTTGCCTGCTCCAGTGAGGCCAC
TGATCAACTAAAGGAGAAAAGGAAGGGTGTGGCCACCTTACCAGTTACTTTTGCAGCTGAGGTTCCAGCT
GAGGAGCCGGTGACTTTCCAGGATGTGGCTGTAGACTTCAATGAGGAGGAGTGGCGGCTACTAGGTCCAA
CGCAGAAGACTGAGTATCATGATGTGATGCTAGAGACCTTGGGCAACTTGGTCTCTGTGGGGTGGGAGCC
TACATTGGGAAACAGAGAGTTAACTCCAGACTCTCCCATTCCTGTGGTAAAACCAATTCATGACCCAAAC
ACAAAAGATCTCTCAAGGAATGGTACCCAGTCTACTGTCTTTGAAAGTATCTTAGAAGATGGGGTCAAAG
AAATGCACACCATAGAATCAAATCAAGTGGGGAATCTACAGGAAAAAGGCCATCCTCAGAAGAAGTTCTC
TGAAAGCTCCAAGTCTCAAGACCAAACTAGTCGTCACAAAAGCCAGGGCTCACTCAATGAAGTTCTTCCT
AGAAAGTATGTAAAAGTTAAGCAGAAGGGCACTGGAAAGAGGAAAGGCAGGACAAACACCATTTCCATGA
CACGAGGTTTACGCATAAGAAAACAGCAGAAGGACTCTGTGGAGTGGCAAGGCAGGAGTGGCAGCACTCC
TGTGACACATGGCTCCTCCATAAAAAACCAGCAACAGGGTTCTGAGCAGGGAAAACCTGGGACCAGTAGA
GATCCCATTACACTTACTGTGCCTGCAAAAGTTTACCAGAAAGCCACTGGCTCTAAAGAGAGTATACTTA
TGGACAGTAGCGATGCCATGGTGTCTGATGTACCTCCAAAGATTCACCAGAAAGGCCCTGAATGGCATAA
AGTTGGGGAAAGTAACAATTCCATGTTACAAGGTTCATCTGTACAAAATCACCAGATGGAGTCTGGGGCA
GGGAGAGCCAGTGACAACAGTCTCTTGACACATGCCTTACCTGTAAAAAGTCATCAGAAAGGCTATAAAG
AAGGAAACGTCCAAGGGAACAGGAATTCCTGGAAACATATAAAACCTCACCAGAAGGGTTCTAAAGGGGA
AAGAGTCGAGGAACTTAGCACTTCTGAAAAACATGTCCCCTATGTAAAAAATCACCTAAAGACCTCGGAA
AGAGGAAAAGACAGGGAAATCAATGCTTCCATAAAATGTGATCCCTATATAAAAACTTACTATAGAGGTT
CTGATGTGGGAAGGCTCAGGAGAGCCAACAATTGTAGGAAAGCCTTCAGCCTGCATGCTCAGCAGATATC
CTTTATAAAAATTCACAAGGGGAGCCAAGTTTGCCGATGTAGTGAATGTGGTAAACTGTTCCGGAATGCT
AGGTATTTCTCTGTCCATAAGAAGATCCACACAGGAGAGCGGCCATATATGTGTATGGCCTGTGGGAAAG
CATTTGTTCAGAGCTCCTCCCTCACACAGCATCTTAGAATTCATAGTGGAGAGAGACCATTTGAGTGTTC
AGAGTGTGGGAGGACCTTCAACGACCGCTCAGCCATCTCTCAGCACCTGAGAACTCATACTGGAGCTAAG
CCCTACCACTGTGAGCGCTGTGGGAAAGCTTTCCGTCAGAGTTCCCACCTTACCAGGCATGAGAGAACTC
ATACTGGTGAGAGACCATATGTGTGCATCAAGTGTGGGAAGGCATTCACACAGAGCTCACACCTTATTGG
GCATCAGAAAACACATGGGATAAAATTCAAGAAGCAGCCCAAATTGTAG

Translation (832 aa):
MEDSMASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQL
EKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDL
NPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQF
LNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPA
EEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPN
TKDLSRNGTQSTVFESILEDGVKEMHTIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLP
RKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKNQQQGSEQGKPGTSR
DPITLTVPAKVYQKATGSKESILMDSSDAMVSDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGA
GRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSE
RGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNA
RYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAK
PYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH