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Report for CCDS20808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20808.1 Public Mus musculus 7 Vmn1r84 23 108 98 CCDS HistoryNCBI Gene:171267Re-query CCDS DB by CCDS ID:20808.1Re-query CCDS DB by GeneID:171267See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086228.2 ENSMUSP00000083405.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086228.2Link to Ensembl Protein Viewer:ENSMUSP00000083405.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000086228Re-query CCDS DB by Protein ID:ENSMUSP00000083405
Original member Current member NCBI NM_134233.1 NP_598994.1 Accepted alive Link to Nucleotide Sequence:NM_134233.1Link to Protein Sequence:NP_598994.1Re-query CCDS DB by Nucleotide ID:NM_134233Re-query CCDS DB by Protein ID:NP_598994Link to BLAST:NP_598994.1

Chromosomal Locations for CCDS 20808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12361808 12362764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTGGTTAAATTTGTTTATCCCAGGTGAAAAGAACATGGCTCCTGAGAACTTGCCAGTGGGGATTTTGT
TCTTTTCTCAAACAGCTGTGGGAATCCTTGGTAACTGGTCAATTCTTCTTCATTATGTCACATCTGTAAT
CACTGGAAAAAGTTTGATGCCCAAAGACCAGATTTTAAAGCATCTGACTTTAGCCAATTCCTTGGTTATT
ATCTCAAGAGTAACACCTCACATAATGGTACAACTGGGGTTGCAGTATCTCCTGGATGACCTCTTATGTA
AACTTACTCTCTACAGCAATCGAGTGTCCCGGGGCATTTCCCTGCACTGCACCTGCCTCTTGAGTTGCTT
CCAAGCAATCACAATCAGCCTCAGTCACTCCAGGCTGATGACACTTACACACTCTGTCTCAAAATACATG
ATTCAGTTCTGCTCTATAAGCTGGCTTCTACATCTGCTTCTAAACATCAAGACAGCTATAGATGTGATTG
GACCAAATACTATAAAAAATGTCACCAGGAAAATCATGTTGGGATACTGTTCAGCATTTGCTTTCAGCAA
TGGTGTTACTGGCCTACATTTGTTCTTTGTTTGTTTCACTGATGGTCTGTGTTTGAGCATCATGGTATGG
GCCAGTATCTTTATGGTGAAGATTCTCTATAGGCATAAGAGTCAGCTACAGTACATTCACAGTGCCCACC
ATCCCCTCAGAGTCTCCCCTGAAGACAAAGCCACAAAAACCATCTTGATTCTTGTGTTTACCTTTGTCCT
CTCCTACTCCATGTCCTTCATACTCATTATCTATACTGTGGTTTTTGACAATCCAAGGCTGTGGATAATA
AACATATTTACATTCTTAGACACATGCTTTCCCACATTTTGTCCCTTCATCCTTATCAGTAATAACCAAT
CTACTCCTAAGAACGCTTTACCCTGCTGTAGTAGAAGGAATTTATAA

Translation (318 aa):
MWLNLFIPGEKNMAPENLPVGILFFSQTAVGILGNWSILLHYVTSVITGKSLMPKDQILKHLTLANSLVI
ISRVTPHIMVQLGLQYLLDDLLCKLTLYSNRVSRGISLHCTCLLSCFQAITISLSHSRLMTLTHSVSKYM
IQFCSISWLLHLLLNIKTAIDVIGPNTIKNVTRKIMLGYCSAFAFSNGVTGLHLFFVCFTDGLCLSIMVW
ASIFMVKILYRHKSQLQYIHSAHHPLRVSPEDKATKTILILVFTFVLSYSMSFILIIYTVVFDNPRLWII
NIFTFLDTCFPTFCPFILISNNQSTPKNALPCCSRRNL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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