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Report for CCDS20780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20780.1 Public Mus musculus 7 Or10am5 23 108 98 CCDS HistoryNCBI Gene:269862Re-query CCDS DB by CCDS ID:20780.1Re-query CCDS DB by GeneID:269862See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051982.5 ENSMUSP00000056639.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051982.5Link to Ensembl Protein Viewer:ENSMUSP00000056639.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000051982Re-query CCDS DB by Protein ID:ENSMUSP00000056639
Original member Current member EBI ENSMUST00000207820.2 ENSMUSP00000147127.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207820.2Link to Ensembl Protein Viewer:ENSMUSP00000147127.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000207820Re-query CCDS DB by Protein ID:ENSMUSP00000147127
Original member Current member EBI ENSMUST00000213656.1 ENSMUSP00000149129.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213656.1Link to Ensembl Protein Viewer:ENSMUSP00000149129.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213656Re-query CCDS DB by Protein ID:ENSMUSP00000149129
Original member Current member EBI ENSMUST00000216447.1 ENSMUSP00000149880.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216447.1Link to Ensembl Protein Viewer:ENSMUSP00000149880.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216447Re-query CCDS DB by Protein ID:ENSMUSP00000149880
Original member Current member EBI ENSMUST00000213504.1 ENSMUSP00000151168.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213504.1Link to Ensembl Protein Viewer:ENSMUSP00000151168.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213504Re-query CCDS DB by Protein ID:ENSMUSP00000151168
Original member Current member NCBI NM_207136.1 NP_997019.1 Accepted alive Link to Nucleotide Sequence:NM_207136.1Link to Protein Sequence:NP_997019.1Re-query CCDS DB by Nucleotide ID:NM_207136Re-query CCDS DB by Protein ID:NP_997019Link to BLAST:NP_997019.1

Chromosomal Locations for CCDS 20780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6514474 6515427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGCCACCCTTCTGGGAAGCGCCACCCTGGGCCAATCAGAGCCGAGCACGCGAGCTGGAGTTCGTGCTGC
TGGGTTTTGCACACGTGCCCTCACTACGCCCGATGCTTGCAGCGCTCTTCCTGGCAGCCTTCCTGCTCAC
AATGTCAGGGAACTCGCTCATCGTCTTGCTCACCAGCCTGGACTTCGGCCTCCGCACGCCCATGTACTTC
TTCCTGCGCCAACTGGCGCTGGTAGAGATCTGCTTCTCACTGGACGTGGCACCCCGCCTGCTGGTGACCC
TGCTGCAGCCTGGACGTGGGGTGTCCCCCACGAGCTGTGCCCTGCAGCTGCTCCTTGTGCTGTCCTGTGT
CACATCTGAGTGCTTCCTTCTCATGGTCATGGCCTGGGATCGCTTTCTGGCCATCTGCAGGCCACTGCGC
TATGGCGCCATCATGAGCCCGCAGCTGTGCTACCTGCTAGCTACTACCTGCTGGCTGGCGGGAATCCCTG
TGGCACTCGTCTTCACCATCTGGCTCTTTAACTTCCCCTTCTGTGGGCCACGTGGCATCCGACACTTCTT
TTGTGACATAGCACCTCTGCTGAGCCTGGTGTGTGCAGACACCAGAGTTTTCGAGGCCAATGTGTTTGTG
GCCACCGTCCTCGTCATCATGGTTCCCTTCTGTCTCATAGCCACATCCTATGTGATGATTCTGGTTGCTG
TCCTTAGGATGCCATCGGCCTCTGGGCGCCACAAGGCCCTGTCCACCTGCGCCTCCCATCTCATAGTGGT
AATTCTGTTCTATGGCACAACAGGGGTCATCCACTTGCGCCCCAAGGCCAGCTACTCTCCAGAGAGCAAG
CAAGTGGTGTCGCTGTCATACACCATGGTGACCCCTATGCTTAACCCCCTCATCTACAGCCTGCGGAACA
AGGAGGTCAAGGCTGCCTTTGGGCGTGTATGCTGTGGACGCTAA

Translation (317 aa):
MPPFWEAPPWANQSRARELEFVLLGFAHVPSLRPMLAALFLAAFLLTMSGNSLIVLLTSLDFGLRTPMYF
FLRQLALVEICFSLDVAPRLLVTLLQPGRGVSPTSCALQLLLVLSCVTSECFLLMVMAWDRFLAICRPLR
YGAIMSPQLCYLLATTCWLAGIPVALVFTIWLFNFPFCGPRGIRHFFCDIAPLLSLVCADTRVFEANVFV
ATVLVIMVPFCLIATSYVMILVAVLRMPSASGRHKALSTCASHLIVVILFYGTTGVIHLRPKASYSPESK
QVVSLSYTMVTPMLNPLIYSLRNKEVKAAFGRVCCGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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