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Report for CCDS20714.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20714.2 Public Mus musculus 6 Dennd5b 23 108 98 CCDS HistoryNCBI Gene:320560Re-query CCDS DB by CCDS ID:20714.2Re-query CCDS DB by GeneID:320560See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20714.1
The coding region has been updated to extend the C-terminus to one that is more supported by available transcript and conservation data. The extension results in the addition of a PLAT/LH2 domain to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20714.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111557.7 ENSMUSP00000107182.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111557.7Link to Ensembl Protein Viewer:ENSMUSP00000107182.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111557Re-query CCDS DB by Protein ID:ENSMUSP00000107182
Original member Current member NCBI NM_177192.3 NP_796166.2 Accepted alive Link to Nucleotide Sequence:NM_177192.3Link to Protein Sequence:NP_796166.2Re-query CCDS DB by Nucleotide ID:NM_177192Re-query CCDS DB by Protein ID:NP_796166Link to BLAST:NP_796166.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796166.2 1274 A2RSQ0 1274 100% 0 0

Chromosomal Locations for CCDS 20714.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 148993706 148993889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148998257 148998431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148999921 149000047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149000599 149000681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149005166 149005353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149006726 149006844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149009755 149009900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149014116 149014237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149016982 149017110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149019341 149019422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149020545 149020623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149027283 149027435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149029110 149029241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149033266 149033359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149036386 149036536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149041516 149041747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149044483 149045019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149054900 149055087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149068050 149068716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149080806 149080915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149101183 149101309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3825 nt):
ATGAGCGGTAGCAGCGCGGCGCCGGGCCCGGGCTCGGGGTCCTCCCCGGCCGCCTGTCGCTTCGCGCACT
ACTTCGTGCTGTGCGGGATCGATGCGGACAGCGGGCTGGAGCCCGACGAGCTGGCGGGTGAAAATTTTGA
TCAGAGTCCTCTGAGAAGAACATTCAAATCCAAAGTTCTGGCCCACTATCCTCAAAACATAGAATGGAAC
CCTTTTGATCAAGATGCAGTGAACATGCTGTGCATGCCCAAAGGGCTGTCTTTCAGAACACAAGCTGACA
ATAAAGAGCCTCAGTTCCACTCATTTATAATTACCCGGGAAGATGGTTCTCGCACCTATGGTTTTGTTCT
CACTTTCTATGAAGAAGTTACAAGTAAGCAAATCTGTACAGCCATGCAGACACTGTACCAGATGCATAAT
GCTGAGCAGTACAGCAGTGTGTACGCTTCATCCTCTTGCAGTATGGACTCACTGGCAAGTAGTATTGACG
AGGGAGATGCAACCTCTCTTTTGAAACTCCAGCGATACAACTCTTATGACATCAACAGAGACACCTTGTA
TGTTTCAAAAAGTATCTGCTTGATCACACCTCTGCCTTTCATGCAAGCCTGCAAGAAATTCCTCTTCCAA
CTTCACAAGGCAGTTACCTCACAGCAGCCACCACCCTTGCCGCTTGAGAGCTATATCCACAATATTCTCT
ACGAGGTGCCCCTTCCGCCTCCTGGGAGGTCACTGAAATTTTATGGTGTTTATGAACCTGTCATCTGCCA
GAGGCCTGGGCCCAATGAACTCCCTCTTTCTGACTACCCTCTTCGAGAGGCCTGTGAGCTCCTGGGATTA
GAGAACCTAGTGCAAGTGTTCACCTGTGTTCTTTTAGAGATGCAGACCCTTCTCTACTCACAAGATTATC
AGCGCCTGATGACAGTGGCAGAAGGCATTACCACACTCTTGTTCCCTTTTCAATGGCAGCATGTTTATGT
ACCCATCCTCCCTGCCTCTCTGCTACATTTTCTTGATGCCCCTGTCCCTTATCTGATGGGTCTTCAGTCA
AAAGAAGGAACTGACCGGTCTAAATTAGAACTTCCTCAAGAGGCTAATTTGTGCTTCGTGGATATTGACA
ACCATTTTATTGAGTTGCCTGAAGAATTTCCACAGTTCCCCAATAAAGTGGATTTTATCCAAGAGTTGTC
TGAAGTTCTTCTCCAATTTGGGATTCCTCCTGAGGGCAGCCTACATTCTAGTGAGAGTGCCACCAAACTG
AAGAATATGGTTCTGAAAGATTTGGCTAATGACAAAAAGAATGGAAATGTCCCCAACAACAGCGTCAGCG
TGTATGAGCTACTGAAGGGCAGTGAGACCATAGCCCGCCTCCAGGCTCTTGCCAAGAGGACTGGGGTGAC
CATGGAAAAAATTGACCTTCCAGCTTCTCTGAGTGAAAAAGAAAAGGATTTAAAATTGCAGTGTGAAGAG
GCCGACTTGAGGGACTCCCAGCTCAATGTACAGCTGCGAGAGGTCTTTGCCAACCGCTTTACACAGATGT
TTGCCGATTACGAAGCATTTGTGATTCAGACTGCCCAGGACATGGAGTCCTGGCTGACCAACCGGGAACA
GATGCAGAACTTTGACAAAGCTTCTTTTCTCTCTGACCAGCCTGAGCCTTACCTGCCATTTCTTTCACGC
TTCATTGAAACACAGATGTTTGCCACCTTTATTGATAATAAGATCATGTCTCAATGGGAAGAGAAAGACC
CTCTGCTTCGGGTCTTTGATTCTCGGATTGAGAAGATCAGATTGTATAATGTAAGGGCACCCACCCTGCG
GACATCTATATATCAGAAATGCAGCAGTTTAAAAGAAGCAGCCCAGTCAATTGAACAAAGATTGATGAAA
ATGGATCACACTGCAATCCACCCACATCTACTTGATATGAAAATTGGTCAAGGCAAATATGAGCAAGGGT
TCTTTCCAAAGTTACAGTCCGATGTCTTGGCAACAGGACCAGCCAATAACAATCGCTGGGTGAGTCGAAG
TGCCACAGCACAGCGCAGGAAAGAGCGCCTTCGCCAGAGCTCTGAACACATTGGGCTGGACAGTGACTTA
CGGGAGAAATATATGCAAGAGGCACGAAGTTTAGGAAAAAACCTGAGGCAACCAAAACTGTCAGATCTTT
CACCTGCTGTGATTGCACAAACCAACTGGAAATTTGTAGAAGGTTTATTAAAAGAATGCAGAATGAAGAC
AAAACGCATGTTGGTAGAGAAGATGGGACATGAAGCAGTAGAACTGGGCCATGGAGAAGCAAACATTACT
GGCTTGGAAGAAAACACCTTGATCGCCAGCCTGTGTGACCTACTGGAGAGGATATGGAGCCACGGCTTAC
TGGTCAAGCAGGGGAAGTCTGCCTTGTGGTCACATTTGCTCCAGTTTCAGGATAGAGAAGAGAAACAAGA
GCACCTCACAGACTCGCCAGTTGCCCTTGGACCAGAAAGAAGAAAATCTGACTCAGGAGTTATGTTACCA
ACACTCAGAGTCTCTCTTATTCAAGACATGAGGCATATTCAGAACATGACTGAGATCAAGACTGACGTTG
GACGGGCGCGGGCGTGGATAAGGTTGTCCCTGGAAAAGAAGCTCTTGTCGCAGCACCTCAAGCAGCTGCT
CTCTAACCAGCCACTGACCAAGAAGCTTTATAAGCGCTATGCTTTTCTCCGTTGTGAAGAAGAAAGAGAA
CAGTTTCTTTACCATCTGCTTTCCCTCAACGCTGTGGACTACTTCTGCTTTACCAGTGTGTTCACCACTA
TCATGATTCCTTATAGATCAGTGATCATTCCAATTAAAAAGCTGAGCAATGCAATCATTACCTCGAACCC
GTGGATCTGTGTTTCAGGAGAGCTGGGAGACACCGGAGTAATGCAGATTCCAAAGAACTTGCTTGAGATG
ACTTTTGAGTGCCAGAACCTGGGAAAGCTGACTACAGTTCAGATTGGCCATGATAACTCCGGACTGTTAG
CTAAATGGCTAGTGGATTGTGTCATGGTCAGAAATGAAATCACAGGACATACATACAGATTCCCTTGTGG
GCGGTGGCTGGGGAAAGGCGTGGATGACGGCAGCCTGGAGAGAATTCTTATTGGAGAATTGATGACATCA
GCTTCAGATGAAGACCTGGGAAAGCAGTGTCGGACTCCACCACAGCAGAAATCTCCCACGACAACCAGGA
GACTGAGTATTACCTCACTAACGGGAAAGCCTGCCAAACCCAATGCTGGACAGATCCAAGAAGGAATTGG
AGAAGCTGTGAACAATATTGTGAAGCATTTTCACAAACCTGAGAAAGAGAGAGGAAGCCTCACAGTGCTG
CTGTGCGGAGAAAATGGCCTGGTTGCTGCACTTGAACAAGTTTTCCATCATGGGTTCAAATCTGCCCGCA
TCTTTCACAAGAATGTCTTCATCTGGGACTTCGTAGAGAAAGCAGTGGCTTATTTTGAAACCACTGACCA
GATTTTAGACAATGAAGGTGATGTGCTCATTCAGAAACCATCAAGCAAAACCTTCTGCCACTACGTGAAT
GCTATTAACACTGCACCCAGGAACATTGGGAAGGACGGCAAATTCCAGATTCTAGTTTGCCTGGGAACAA
GGGATCACCTGCTTCCACAGTGGATTCCATTGCTAGCAGAATGTCCTGCCATCACCCGAATGTATGAAGA
GAATGCACTGCTTCGAGACCACATGACTGTCAACTCCCTTATCCGAATTCTTCAGACCATTCAGGATTTC
ACCATAGTCTTGGAAGGATCACTAATCAAAGGAGTGGATGTGTAA

Translation (1274 aa):
MSGSSAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAGENFDQSPLRRTFKSKVLAHYPQNIEWN
PFDQDAVNMLCMPKGLSFRTQADNKEPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHN
AEQYSSVYASSSCSMDSLASSIDEGDATSLLKLQRYNSYDINRDTLYVSKSICLITPLPFMQACKKFLFQ
LHKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPNELPLSDYPLREACELLGL
ENLVQVFTCVLLEMQTLLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQS
KEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHSSESATKL
KNMVLKDLANDKKNGNVPNNSVSVYELLKGSETIARLQALAKRTGVTMEKIDLPASLSEKEKDLKLQCEE
ADLRDSQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSR
FIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTLRTSIYQKCSSLKEAAQSIEQRLMK
MDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPANNNRWVSRSATAQRRKERLRQSSEHIGLDSDL
REKYMQEARSLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANIT
GLEENTLIASLCDLLERIWSHGLLVKQGKSALWSHLLQFQDREEKQEHLTDSPVALGPERRKSDSGVMLP
TLRVSLIQDMRHIQNMTEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQPLTKKLYKRYAFLRCEEERE
QFLYHLLSLNAVDYFCFTSVFTTIMIPYRSVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEM
TFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGVDDGSLERILIGELMTS
ASDEDLGKQCRTPPQQKSPTTTRRLSITSLTGKPAKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVL
LCGENGLVAALEQVFHHGFKSARIFHKNVFIWDFVEKAVAYFETTDQILDNEGDVLIQKPSSKTFCHYVN
AINTAPRNIGKDGKFQILVCLGTRDHLLPQWIPLLAECPAITRMYEENALLRDHMTVNSLIRILQTIQDF
TIVLEGSLIKGVDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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