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Report for CCDS20646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20646.1 Public Mus musculus 6 Pbp2 23 108 98 CCDS HistoryNCBI Gene:76400Re-query CCDS DB by CCDS ID:20646.1Re-query CCDS DB by GeneID:76400See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050471.3 ENSMUSP00000098414.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050471.3Link to Ensembl Protein Viewer:ENSMUSP00000098414.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000050471Re-query CCDS DB by Protein ID:ENSMUSP00000098414
Original member Current member NCBI NM_029595.3 NP_083871.3 Accepted alive Link to Nucleotide Sequence:NM_029595.3Link to Protein Sequence:NP_083871.3Re-query CCDS DB by Nucleotide ID:NM_029595Re-query CCDS DB by Protein ID:NP_083871Link to BLAST:NP_083871.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083871.3 187 Q8VIN1-1 187 99.4652% 0 1

Chromosomal Locations for CCDS 20646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 135309784 135310347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGCCTACAGACATGAGCATGTGGACCGGGCCGCTGAGCCTCCACGAAGTGGATGAGCAGCCCCAGCACC
TACTGCGGGTCACCTACACCGAGGCGGAGGTGGAAGAGCTGGGCCAAGTGCTGACGCCCACCCAGGTTAA
GCACAGACCCGGAAGCATTTCATGGGATGGCCTTGACACAGGGAAACTCTACACCTTGATCCTCACAGAC
CCGGATGCTCCCAGTAGGAAGAAACCCGTGTACAGGGAATGGCACCATTTTCTGGTGGTCAACATGAAAG
GCAATGACATCAGCAGTGGGAACGTCCTCTCGGATTACGTGGGTTCCGGACCTCCCAAGGGCACTGGCCT
CCATCGCTATGTCTGGCTGGTGTACCAGCAGGACAAGCCACTGAGATGTGACGAACCCATCCTCACCAAC
CGGTCTGGAGACCATCGTGGGAAGTTCAAAACTGCAGCCTTCCGCAAGAAGTATCACCTGGGAGCCCCGG
TGGCCGGCACGTGTTACCAGGCAGAATGGGACAGCTATGTACCAAAGCTGTACAAACAGCTGTCTGGGAA
ATAG

Translation (187 aa):
MPTDMSMWTGPLSLHEVDEQPQHLLRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDTGKLYTLILTD
PDAPSRKKPVYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTN
RSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPKLYKQLSGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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