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Report for CCDS20602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20602.1 Public Mus musculus 6 Klra1 23 108 98 CCDS HistoryNCBI Gene:16627Re-query CCDS DB by CCDS ID:20602.1Re-query CCDS DB by GeneID:16627See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032288.5 ENSMUSP00000032288.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032288.5Link to Ensembl Protein Viewer:ENSMUSP00000032288.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032288Re-query CCDS DB by Protein ID:ENSMUSP00000032288
Original member Current member NCBI NM_016659.3 NP_057868.2 Accepted alive Link to Nucleotide Sequence:NM_016659.3Link to Protein Sequence:NP_057868.2Re-query CCDS DB by Nucleotide ID:NM_016659Re-query CCDS DB by Protein ID:NP_057868Link to BLAST:NP_057868.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057868.2 262 P20937 262 98.0916% 0 5

Chromosomal Locations for CCDS 20602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 130364220 130364355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130372821 130372924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130375229 130375371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130377648 130377851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130378993 130379082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130380551 130380662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGAGTGAGCAGGAGGTCACTTATTCAATGGTGAGATTTCATAAATCTGCAGGATTGCAGAAACAAGTGA
GACCTGAGGAGACTAAAGGGCCCAGAGAAGCTGGCTACAGAAGGTGTTCATTCCACTGGAAGTTCATTGT
GATAGCTCTTGGCATCTTCTGTTTCCTTCTTCTGGTAGCTGTTTCAGTGTTGGCAATAAAAATTTTTCAG
TATGATCAACAAAAAAAACTGCAGGAATTTCTAAACCACCACAATAACTGCAGCAACATGCAAAGTGACA
TCAACTTGAAGGATGAAATGCTGAAAAATAAGTCTATAGAGTGTGATCTTCTGGAATCCCTCAACAGGGA
TCAGAACAGATTGTATAATAAAACCAAGACTGTTTTAGATTCCTTACAGCACACAGGCAGAGGTGATAAA
GTATACTGGTTCTGCTATGGTATGAAATGTTATTATTTCGTCATGGACAGAAAAACATGGAGTGGATGTA
AACAGACCTGCCAGAGTTCCAGTTTATCCCTTCTGAAGATAGATGATGAGGATGAACTGAAGTTCCTTCA
GCTCGTGGTTCCTTCAGACAGTTGCTGGGTTGGATTGTCATATGATAATAAGAAAAAAGATTGGGCATGG
ATTGACAATCGCCCATCTAAACTTGCCTTGAACACAAGGAAATACAATATAAGAGATGGGGGATGTATGT
TGTTATCTAAAACAAGACTAGACAATGGTAACTGTGATCAAGTATTCATCTGTATTTGTGGGAAGAGACT
GGATAAATTCCCTCATTGA

Translation (262 aa):
MSEQEVTYSMVRFHKSAGLQKQVRPEETKGPREAGYRRCSFHWKFIVIALGIFCFLLLVAVSVLAIKIFQ
YDQQKKLQEFLNHHNNCSNMQSDINLKDEMLKNKSIECDLLESLNRDQNRLYNKTKTVLDSLQHTGRGDK
VYWFCYGMKCYYFVMDRKTWSGCKQTCQSSSLSLLKIDDEDELKFLQLVVPSDSCWVGLSYDNKKKDWAW
IDNRPSKLALNTRKYNIRDGGCMLLSKTRLDNGNCDQVFICICGKRLDKFPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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