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Report for CCDS20559.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20559.2 Public Mus musculus 6 Dyrk4 23 108 98 CCDS HistoryNCBI Gene:101320Re-query CCDS DB by CCDS ID:20559.2Re-query CCDS DB by GeneID:101320See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20559.2
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data. This new splice pattern represents an extended exon structure, including a longer 5' CDS with its splice sites affected and changing the splice donor in the third last exon. The update changes the protein length from 594 aa to 632 aa.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20559.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078521.6 ENSMUSP00000077606.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078521.6Link to Ensembl Protein Viewer:ENSMUSP00000077606.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078521Re-query CCDS DB by Protein ID:ENSMUSP00000077606
Original member NCBI NM_207210.2 NP_997093.2 Updated not alive Link to Nucleotide Sequence:NM_207210.2Link to Protein Sequence:NP_997093.2Re-query CCDS DB by Nucleotide ID:NM_207210Re-query CCDS DB by Protein ID:NP_997093
Current member NCBI NM_207210.3 NP_997093.2 Accepted alive Link to Nucleotide Sequence:NM_207210.3Link to Protein Sequence:NP_997093.2Re-query CCDS DB by Nucleotide ID:NM_207210Re-query CCDS DB by Protein ID:NP_997093Link to BLAST:NP_997093.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997093.2 632 Q8BI55-1 632 100% 0 0

Chromosomal Locations for CCDS 20559.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126876321 126876550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126877160 126877338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126880225 126880354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126884027 126884087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126885229 126885401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126886652 126886733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126890024 126890162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126891633 126891773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126892084 126892220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126894677 126894840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126897163 126897301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126898947 126899057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126899800 126899880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126916286 126916379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 126921750 126921787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGCAGCTCCTCCGACTTCCTGCCCTCACCCGGACAGAGACTTCAATGGATACAAACAAGGCAAGGAAAC
GCAGTTTGACAACCTTCCCAATTTTGAAAGCAAGGAAGAAGCAGAGTTTCACCTCTGTGAAGGTTGAGAG
TAAGCCTTTGGGTCACCTCCAGAAGCCATCCTCCAAGAACAAGAAGCTGAGAGTGAACCGATGTCCACAA
AAGATTCCAAGTAACACGGCGTTCCCTTTTGTGGACACAAAGGGGAAGAGGAACACAGTTAACTTCCCCC
AGATTGGCAACAAAGTCCCATCAAAGGGGCCCATGCAGTATCAGGAAAATCAAATTCATAATCAAGTGCT
ATCCTCTGAACTCAAGACTTCAGAAATACCTTTCAACATTAACACCAAAGCCCAAGACACCAAGCCACAC
CCAGAACTACAAAAGAAGCACAAAGTCCCTCTTACAGTAGCAGAGGCCCTAAAGTTCTTTAAGAATCAGC
TGTCCCCTTATGAGCAAAGCGAAATCCTGGGCTACTCAGAGCTGTGGTTCCTGGGCCTTGAAGCCAAGAA
GCTCAACGTGGTTCCAGAGAAGTTCAGCAAGACAAGCTTTGATGATGAGCACGGTTCCTATATGAAGGTC
CTGCATGACCACATTGCCTACCGATATGAGGTTCTGGAGATGATCGGGAAAGGGTCCTTTGGACAGGTGG
CCAAGTGCTTGGATCACAAAAACAATGAGTTGGTGGCCCTGAAAATCATCAGGAACAAAAAGAGATTTCA
CCATCAGGCTCTGGTGGAGCTGAAGATCCTGGAAGCCCTCAGAAGGAAGGACAAAGACAACAACCACAAT
GTGGTCCACATGAAGGATTTCTTCTACTTCCGGAATCACCTCTGTATCACCTTTGAGCTCCTGGGAATCA
ACCTGTATGAGTTGATGAAGAACAACAGCTTTCATGGCTTCAATCTGTCCATAGTTCGGCGCTTCACCTT
TTCCATTTTGAAATGCTTACACATGCTTTATGTAGAGAAAATCATCCACTGTGACCTCAAGCCGGAAAAT
ATTGTGCTATACCAGAGGGGCCAAGTCACTGTTAAAGTTATTGACTTTGGGTCAAGCTGTTATGAACACC
AGAAAGTGTATACGTACATCCAAAGTCGTTTCTACCGATCCCCAGAGGTGATTCTGGGACACCCCTATAA
CATGGCCATTGACATGTGGAGCCTGGGCTGCATCATGGCGGAGCTGTACACCGGATACCCACTGTTCCCT
GGGGAGAACGAGGTGGAGCAGCTGGCTTGCATCATGGAGGTGCTGGGCCTGCCACCTGCCCACTTCACCC
AGACAGCCTCCAGGAGACAGGTATTCTTTGATTCCAAAGGTCTTCCCAAAAATATAAACAACAACAGAGG
GGGAAAAAGATACCCAGATTCCAAGGATCTCACGATGGTGGTGAAAACCTACGATTCCAGCTTCCTGGAC
TTTCTCAGAAGGTGTTTGGTGTGGGAGCCTTCTCTGCGCATGACCCCCGAGCAGGCCCTCAAGCATGCCT
GGATTCACGAGCCGAGGAAATTCAAACCACGGCCCAAGCCACAGATATTAAGGAAGCCTGGTGCCAGTAT
TTCCTCTGAGATAAGCACGGAAAAGGCTGAAGAGCAACAGGCCAGCAAAGGCAAAAAAGATGAGGCTACC
AAAGAAACTACAGACAAATTGAAGGACGAAGCTGAGAAGCACCTTGAGAATTCGGGCAAACAGCAGAGCT
CTGTGGAGCACACAGCAGACACCATCCAGCTGCCTCACCTAACAGAAGCTTCTGGAAAGTCAGAGACTGT
TGCTGGGTCAGAGATGTCCGCAGAACAGCAGAGCACCTCCTCCCCCAAGAGCACAAACATCTTACCACCC
ATCGTGTGA

Translation (632 aa):
MQLLRLPALTRTETSMDTNKARKRSLTTFPILKARKKQSFTSVKVESKPLGHLQKPSSKNKKLRVNRCPQ
KIPSNTAFPFVDTKGKRNTVNFPQIGNKVPSKGPMQYQENQIHNQVLSSELKTSEIPFNINTKAQDTKPH
PELQKKHKVPLTVAEALKFFKNQLSPYEQSEILGYSELWFLGLEAKKLNVVPEKFSKTSFDDEHGSYMKV
LHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNNHN
VVHMKDFFYFRNHLCITFELLGINLYELMKNNSFHGFNLSIVRRFTFSILKCLHMLYVEKIIHCDLKPEN
IVLYQRGQVTVKVIDFGSSCYEHQKVYTYIQSRFYRSPEVILGHPYNMAIDMWSLGCIMAELYTGYPLFP
GENEVEQLACIMEVLGLPPAHFTQTASRRQVFFDSKGLPKNINNNRGGKRYPDSKDLTMVVKTYDSSFLD
FLRRCLVWEPSLRMTPEQALKHAWIHEPRKFKPRPKPQILRKPGASISSEISTEKAEEQQASKGKKDEAT
KETTDKLKDEAEKHLENSGKQQSSVEHTADTIQLPHLTEASGKSETVAGSEMSAEQQSTSSPKSTNILPP
IV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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