NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20503.1 Public Mus musculus 6 Foxj2 23 108 98 CCDS HistoryNCBI Gene:60611Re-query CCDS DB by CCDS ID:20503.1Re-query CCDS DB by GeneID:60611See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20503.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003238.13 ENSMUSP00000003238.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003238.13Link to Ensembl Protein Viewer:ENSMUSP00000003238.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003238Re-query CCDS DB by Protein ID:ENSMUSP00000003238
Original member Current member EBI ENSMUST00000177927.3 ENSMUSP00000137645.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177927.3Link to Ensembl Protein Viewer:ENSMUSP00000137645.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177927Re-query CCDS DB by Protein ID:ENSMUSP00000137645
Original member Current member NCBI NM_021899.3 NP_068699.1 Accepted alive Link to Nucleotide Sequence:NM_021899.3Link to Protein Sequence:NP_068699.1Re-query CCDS DB by Nucleotide ID:NM_021899Re-query CCDS DB by Protein ID:NP_068699Link to BLAST:NP_068699.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068699.1 565 Q9ES18 565 100% 0 0

Chromosomal Locations for CCDS 20503.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122828171 122828503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122831436 122831510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122832938 122833006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122833161 122833301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122833681 122833876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122837821 122838204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122838584 122838685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122839461 122839670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122840226 122840324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122842764 122842852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGGCCTCCGACCTGGAGAGTAGCCTCACCTCCATAGACTGGCTGCCACAGCTGACTCTCAGAGCCACTA
TTGAGAAGCTTGGGAGCGCTTCTCAGGCTGGGCCTCCAGGGGGCGCCCGGAAGTGCTCCCCAGGCTCGCC
CACAGATCCCAACGCCACCCTCAGCAAAGATGAGGCAGCGGTCCACCAAGATGGCAAGCCACGGTACAGC
TATGCCACCCTCATCACCTACGCCATCAACTCCTCCCCAGCTAAGAAGATGACTCTCAGTGAGATTTACC
GCTGGATCTGCGACAACTTCCCCTATTACAAGAACGCTGGCATCGGTTGGAAGAATTCCATTCGACACAA
CCTTTCCCTTAACAAGTGTTTCCGGAAGGTGCCCAGACCTCGGGATGACCCTGGGAAGGGCTCCTATTGG
ACAATTGACACCTGCCCTGACATTTCCCGGAAGAGAAGACACCCTCCAGATGATGACCTATCCCAAGACT
CCCCAGAGCAGGAAGCCAGCAAAAGCCCCCGGGGAGGTGTTCCAGGGAGTGGAGAAGCCTCACTCTCTCA
CGAGGGGACTCCTCAGATGTCACTTCAGAGCCCCTCCTCCGTGGCCAACTACAGCCAGGGCCCAGGGTCT
GTGGATGGTGGAGCAGTGGCAGCAGGGGCCCCAGGCCAGGAGAGCACAGAGGGCGCCCCTCCCCTCTACA
ACACCAACCATGACTTCAAATTCTCCTACTCAGAGATCAACTTTCAGGACCTAAGCTGGTCCTTCCGCAA
CCTCTACAAGTCCATGCTGGAGCGGTCCTCCTCCTCCCAGCACGGCTTTTCCTCACTCCTGGGAGACATG
CCACCTTCTAACAACTACTACGTGTACCAGCAGCAGCAACAGCAGCAGCCACCACCACAGCCACAGCCAC
CACCCCAGCAACCACAACCACAGCAGCAGCAGGCACCCACTCAGGGCCCCTCAAATGTAGGGGGTGCCCC
TCCACTGCACACCCCAAGCCCTGATGGCTGTACTACACCAGGGGGAAAACAAGCGGGCGCTGAAGGCTAC
GGCCCCCCGACTGGGATGGCCATGCATCCTCCCCCACTGCAGCACGGAGGCTACCACCCTCATCAGCACC
ATCCCCACTCCCACCCTGCCCAGCAGCCACCACAGCCACAGGCGCAGAGCCAGGCATCCATCAACAGCAC
TGGCTTTGCCTTTCCTCCTGACTGGTGCTCCAATATTGACTCCTTAAAGGAAAGCTTCAAAATGGTGAAC
CGGCTCAACTGGTCCAGCATCGAGCAGTCCCAGTTCTCAGAGCTCATGGAGAGCCTACGGCAGGCAGAGC
AGAGGAACTGGACCCTCGACCAGCATCACATCGCCAACTTGTGTGACTCCCTCAACCACTTCCTCACCCA
GACTGGTCACATGCCCCAACAAGGGGGCTCCCACCGACCACCTGCCCCTTCCCGCATCACTGACTCCTGT
GCCCTCACCAGTGGCAAACCGGAGCCATCCATGAACCAAGTGAACTCTTACGGGCACCCACAAGCTTCCC
ATCTCTACCCTGGCCCAGCACCAATGTACCCGATCTCCACCCAAGACTCAGCAGGATACAACCGCCCAGC
ACACCACATGGTTCCCCGGCCACCTGTCCCACCTCCTGGTGCCAATGAGGAGATCACCGATGACTTCGAC
TGGGACTTGATCACTTAA

Translation (565 aa):
MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGGARKCSPGSPTDPNATLSKDEAAVHQDGKPRYS
YATLITYAINSSPAKKMTLSEIYRWICDNFPYYKNAGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYW
TIDTCPDISRKRRHPPDDDLSQDSPEQEASKSPRGGVPGSGEASLSHEGTPQMSLQSPSSVANYSQGPGS
VDGGAVAAGAPGQESTEGAPPLYNTNHDFKFSYSEINFQDLSWSFRNLYKSMLERSSSSQHGFSSLLGDM
PPSNNYYVYQQQQQQQPPPQPQPPPQQPQPQQQQAPTQGPSNVGGAPPLHTPSPDGCTTPGGKQAGAEGY
GPPTGMAMHPPPLQHGGYHPHQHHPHSHPAQQPPQPQAQSQASINSTGFAFPPDWCSNIDSLKESFKMVN
RLNWSSIEQSQFSELMESLRQAEQRNWTLDQHHIANLCDSLNHFLTQTGHMPQQGGSHRPPAPSRITDSC
ALTSGKPEPSMNQVNSYGHPQASHLYPGPAPMYPISTQDSAGYNRPAHHMVPRPPVPPPGANEEITDDFD
WDLIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH