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Report for CCDS20490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20490.1 Public Mus musculus 6 Slc6a13 23 108 98 CCDS HistoryNCBI Gene:14412Re-query CCDS DB by CCDS ID:20490.1Re-query CCDS DB by GeneID:14412See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064580.13 ENSMUSP00000066779.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064580.13Link to Ensembl Protein Viewer:ENSMUSP00000066779.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064580Re-query CCDS DB by Protein ID:ENSMUSP00000066779
Original member Current member NCBI NM_144512.3 NP_653095.1 Accepted alive Link to Nucleotide Sequence:NM_144512.3Link to Protein Sequence:NP_653095.1Re-query CCDS DB by Nucleotide ID:NM_144512Re-query CCDS DB by Protein ID:NP_653095Link to BLAST:NP_653095.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653095.1 602 P31649 602 100% 0 0

Chromosomal Locations for CCDS 20490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 121302702 121302903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121318242 121318376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121321563 121321703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121324265 121324349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121325024 121325156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121326112 121326246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121332363 121332466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121333319 121333443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121334447 121334559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121334839 121334976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121335620 121335722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121336040 121336140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121336815 121336985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121337294 121337416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGAGAACAGGGCCTCGGGAACAACCAGTAATGGAGAGACAAAGCCAGTGTGTCCAGCCATGGAGAAAG
TGGAGGAAGATGGTACCCTGGAACGGGAGCACTGGAACAACAAGATGGAGTTTGTGCTGTCTGTGGCTGG
GGAGATCATTGGCTTAGGCAACGTCTGGAGGTTTCCCTATCTCTGCTACAAGAACGGGGGAGGTGCCTTC
TTTATCCCCTACCTCATCTTCCTTTTTACCTGTGGCATCCCTGTCTTCTTCTTGGAGACAGCGCTTGGCC
AGTACACCAACCAGGGAGGCATCACAGCCTGGAGGAGAATCTGTCCCATCTTTGAAGGCATCGGCTATGC
CTCACAGATGATCGTCAGCCTCCTCAATGTCTACTACATCGTTGTCCTGGCCTGGGCCCTCTTCTACCTC
TTCAGCAGCTTCACCACTGACCTCCCCTGGGGAAGTTGCAGCCATGAGTGGAATACAGAAAACTGTGTGG
AATTCCAGAAGGCCAATGATTCCATGAATGTGACCTCCGAGAATGCCACCTCCCCTGTCATCGAGTTCTG
GGAGAGGCGAGTCCTGAAGCTCTCGGATGGCATCCAGCACCTGGGGTCCCTGCGCTGGGAACTGGTCCTG
TGCCTCCTGCTCGCCTGGATCATCTGCTACTTCTGCATCTGGAAGGGGGTCAAGTCCACGGGCAAGGTGG
TCTACTTCACAGCCACTTTCCCTTACCTCATGCTGGTGGTCCTGTTGATTCGAGGAGTGACACTGCCCGG
AGCAGCCCAAGGAATTCAGTTTTACCTGTACCCCAACATCACACGTCTGTGGGATCCCCAGGTGTGGATG
GATGCAGGCACCCAGATCTTCTTCTCCTTTGCCATCTGTCTGGGGTGCCTCACGGCCCTGGGAAGCTACA
ACAAGTACCACAACAATTGCTACAGGGACTGCATCGCCCTTTGCATCCTCAACAGCAGCACCAGCTTCAT
GGCCGGGTTTGCTATCTTCTCCATCCTGGGCTTCATGTCTCAGGAGCAGGGTGTGCCCATATCTGAGGTT
GCTGAATCAGGCCCTGGCCTGGCATTCATCGCCTACCCTCGAGCTGTGGTGATGTTACCCTTCTCACCGT
TGTGGGCCTGCTGTTTCTTCTTCATGGTCGTTCTCCTGGGACTAGATAGCCAGTTTGTGTGTGTAGAAAG
CCTTGTGACAGCATTAGTGGACATGTATCCCCGGGTGTTCCGTAAGAAGAATCGGAGGGAGGTCCTCATC
CTTATTGTGTCCGTCATCTCGTTCTTCATCGGGCTCATCATGCTCACAGAGGGCGGCATGTACGTGTTCC
AGCTCTTTGACTACTATGCAGCCAGTGGCATGTGTCTTCTCTTCGTGGCCATCTTTGAGTCCCTCTGTGT
GGCTTGGGTTTATGGAGCCGGCCGCTTCTACGACAACATTGAGGATATGATTGGGTATAAGCCATGGCCT
CTTATCAAATATTGTTGGCTCTTTTTCACGCCAGCTGTGTGCCTGGCGACCTTCCTGTTCTCCCTGATCA
AATACACGCCACTGACCTACAACAAGAAGTACACGTACCCATGGTGGGGGGATGCCCTAGGGTGGCTCCT
AGCTCTGTCCTCCATGATCTGCATTCCTGCCTGGAGCATCTACAAGCTGAGGACTCTCAAGGGCCCACTC
AGAGAGAGACTTCGCCAGCTCGTGTGCCCGGCTGAAGACCTTCCCCAGAAGAACCAACCAGAGCCAACTG
CTCCTGCGACACCGATGACATCCCTTCTCAGGCTCACAGAACTGGAGTCTAACTGCTAG

Translation (602 aa):
MENRASGTTSNGETKPVCPAMEKVEEDGTLEREHWNNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAF
FIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRRICPIFEGIGYASQMIVSLLNVYYIVVLAWALFYL
FSSFTTDLPWGSCSHEWNTENCVEFQKANDSMNVTSENATSPVIEFWERRVLKLSDGIQHLGSLRWELVL
CLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLPGAAQGIQFYLYPNITRLWDPQVWM
DAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCIALCILNSSTSFMAGFAIFSILGFMSQEQGVPISEV
AESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPRVFRKKNRREVLI
LIVSVISFFIGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGAGRFYDNIEDMIGYKPWP
LIKYCWLFFTPAVCLATFLFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMICIPAWSIYKLRTLKGPL
RERLRQLVCPAEDLPQKNQPEPTAPATPMTSLLRLTELESNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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