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Report for CCDS20440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20440.1 Public Mus musculus 6 Tsen2 23 108 98 CCDS HistoryNCBI Gene:381802Re-query CCDS DB by CCDS ID:20440.1Re-query CCDS DB by GeneID:381802See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20440.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040234.8 ENSMUSP00000038211.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040234.8Link to Ensembl Protein Viewer:ENSMUSP00000038211.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040234Re-query CCDS DB by Protein ID:ENSMUSP00000038211
Original member NCBI NM_199033.2 NP_950198.1 Updated not alive Link to Nucleotide Sequence:NM_199033.2Link to Protein Sequence:NP_950198.1Re-query CCDS DB by Nucleotide ID:NM_199033Re-query CCDS DB by Protein ID:NP_950198
Current member NCBI NM_199033.3 NP_950198.1 Accepted alive Link to Nucleotide Sequence:NM_199033.3Link to Protein Sequence:NP_950198.1Re-query CCDS DB by Nucleotide ID:NM_199033Re-query CCDS DB by Protein ID:NP_950198Link to BLAST:NP_950198.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950198.1 460 Q6P7W5 460 100% 0 0

Chromosomal Locations for CCDS 20440.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115547842 115548030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115549913 115549994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115553991 115554027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115559593 115560100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115561380 115561457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115565877 115565927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115568696 115568834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115574563 115574599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115575862 115575973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115576896 115576985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115577931 115577990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGCAGAGGCAGTCTTCCGTGCTCCTAAGAGGAAAAGAAGAGTCTATGAGAGTTACGAGTCACCACTGC
CCATCCCCTTTGGTCAGGACCAAGGTCCCAGGAAGGAATTCCGAATATTCCAGGCTGAAATGATTAGCAA
CAATGTGGTGGTGAGGGGCACAGAGGACATGGAGCAGCTGTATGGGAAGGGTTACTTTGGAAAGGGGATT
CTTTCCAGAAGCCGTCCAAACTTCACAATCGCCAACCCCACGCTGGCTGCCAGATGGAAAGGTGTGCAGA
CAGACATGCCTATAATCACCTCAGAGAAGTATCAGCATCGGGTGGAATGGGCCAGGGACTTCCTGCGTAG
GCAGGGCCACGATGAGAGCACTGTGCAGAAGATCCTTACAGACTACACAGAGCCACTGGAGCTTCCTTGC
AGAGAGGAGAAAGAAGAGACCCCACAGCACGAGCCACTGAGCTCCAAGGCCGACTCCTCCCTGGAAGGCA
GAGTGGAAAAGGATGAACTCCCCGTGACCCCTGGAGGTGCTGGACAGTCAGATGACCTACCCGGTCTCGG
CACACACTCAGACTGCCTGCAGGAGGGGCCTGGCCATGCCACACTCGCTGCGGCTAGTCCATCTAGCCAT
AATGGGCATGTGGCAGAGGACCCCGAGGTTCTCCCCCAGGAAACCCTCGTTCCACAGGGTGGCCTTTGGC
CTGAAGCCAGCAGCCAGGCCGCAGGAGAGAAAAGGGCTGCTCACGAGTATGTGCTCATAGAGGAAGAGCT
GTGTGGTGCCCAGGAGGAGGAGGCGGCGGCGGCATCAGACGAGAAGTTGCTGAAAAGGAAGAAACTTGTG
TGCAGAAGAAATCCATACAGGATCTTTGAGTATCTGCAGCTCAGCCTAGAAGAGGCTTTCTTCCTGGCAT
ACGCCCTGGGATGCCTAAGTATTTACTATGAGAAGGAGCCTCTGACAATAGTGAAACTCTGGCAAGCCTT
CACTGCAGTCCAGCCCACCTTCAGGACAACCTACATGGCCTACCACTACTTCCGAAGTAAAGGCTGGGTG
CCCAAAGTGGGGCTCAAGTATGGAACAGATCTGCTGCTGTATCGGAAAGGCCCTCCATTTTACCATGCAA
GCTACTCGGTCATCATTGAGCTCCTGGATGACAACTATGAGGGCTCCCTCCGCCGGCCTTTCAGCTGGAA
GTCGCTGGCCGCCCTGAGCAGAGTCTCGGGGAACGTCTCCAAGGAGCTGATGCTGTGTTATTTGATTAAG
CCCTCTACCATGACTGCTGAAGACATGGAGACCCCAGAATGCATGAAGAGGATTCAAGTTCAGGAGGTGA
TTCTCAGCCGATGGGTTTCTTCCCGAGAGAGAAGTGACCAAGATGAGCTTTGA

Translation (460 aa):
MAEAVFRAPKRKRRVYESYESPLPIPFGQDQGPRKEFRIFQAEMISNNVVVRGTEDMEQLYGKGYFGKGI
LSRSRPNFTIANPTLAARWKGVQTDMPIITSEKYQHRVEWARDFLRRQGHDESTVQKILTDYTEPLELPC
REEKEETPQHEPLSSKADSSLEGRVEKDELPVTPGGAGQSDDLPGLGTHSDCLQEGPGHATLAAASPSSH
NGHVAEDPEVLPQETLVPQGGLWPEASSQAAGEKRAAHEYVLIEEELCGAQEEEAAAASDEKLLKRKKLV
CRRNPYRIFEYLQLSLEEAFFLAYALGCLSIYYEKEPLTIVKLWQAFTAVQPTFRTTYMAYHYFRSKGWV
PKVGLKYGTDLLLYRKGPPFYHASYSVIIELLDDNYEGSLRRPFSWKSLAALSRVSGNVSKELMLCYLIK
PSTMTAEDMETPECMKRIQVQEVILSRWVSSRERSDQDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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