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Report for CCDS20434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20434.1 Public Mus musculus 6 Slc6a1 23 108 98 CCDS HistoryNCBI Gene:232333Re-query CCDS DB by CCDS ID:20434.1Re-query CCDS DB by GeneID:232333See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032454.7 ENSMUSP00000032454.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032454.7Link to Ensembl Protein Viewer:ENSMUSP00000032454.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032454Re-query CCDS DB by Protein ID:ENSMUSP00000032454
Original member NCBI NM_178703.4 NP_848818.1 Updated not alive Link to Nucleotide Sequence:NM_178703.4Link to Protein Sequence:NP_848818.1Re-query CCDS DB by Nucleotide ID:NM_178703Re-query CCDS DB by Protein ID:NP_848818
Current member NCBI NM_178703.5 NP_848818.1 Accepted alive Link to Nucleotide Sequence:NM_178703.5Link to Protein Sequence:NP_848818.1Re-query CCDS DB by Nucleotide ID:NM_178703Re-query CCDS DB by Protein ID:NP_848818Link to BLAST:NP_848818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848818.1 599 P31648 599 100% 0 0

Chromosomal Locations for CCDS 20434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 114301950 114302187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114302500 114302631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114302747 114302847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114303958 114304067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114304787 114304919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114307697 114307831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114308025 114308128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114308558 114308682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114310138 114310250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114310463 114310594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114311805 114311907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114313439 114313539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114314295 114314462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114315305 114315409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGGCGACTGACAACAGCAAGGTGGCTGATGGGCAGATCTCTACTGAGGTCAGCGAGGCCCCTGTGGCCA
GCGACAAGCCCAAAACCCTGGTAGTCAAGGTGCAGAAGAAGGCCGGGGACCTCCCTGACCGGGACACATG
GAAGGGACGCTTCGACTTCCTCATGTCCTGCGTGGGCTATGCCATCGGCCTGGGCAATGTGTGGAGGTTC
CCTTACCTCTGTGGGAAAAACGGTGGCGGGGCCTTCCTAATCCCATATTTCCTGACGCTCATCTTTGCGG
GTGTTCCTCTCTTCCTTTTGGAGTGCTCCCTAGGCCAGTACACCTCCATTGGGGGCCTGGGCGTATGGAA
GCTGGCGCCCATGTTCAAGGGTGTGGGCCTCGCGGCAGCTGTGCTGTCCTTCTGGCTGAACATCTACTAC
ATCGTCATCATCTCCTGGGCCATCTACTACCTGTACAACTCCTTCACCACGACCCTGCCATGGAAACAGT
GTGACAACCCGTGGAACACTGACCGCTGCTTCTCCAACTACAGCCTGGTCAATACCACCAACATGACCAG
CGCCGTGGTGGAGTTCTGGGAGCGCAACATGCACCAGATGACAGATGGACTGGACAAGCCAGGACAGATC
CGCTGGCCTCTGGCCATCACACTGGCCATTGCCTGGGTGCTCGTGTATTTCTGCATCTGGAAGGGTGTTG
GTTGGACTGGAAAGGTGGTCTACTTCTCAGCCACGTACCCCTACATCATGCTTATCATCCTGTTCTTCCG
TGGAGTGACGCTTCCCGGGGCCAAGGAGGGGATCCTCTTCTACATCACACCCAACTTCCGAAAGCTGTCT
GATTCTGAGGTGTGGCTTGACGCCGCCACCCAGATCTTCTTCTCCTACGGGCTGGGCCTGGGGTCCCTGA
TTGCTCTGGGAAGCTACAACTCTTTCCACAACAATGTGTACAGGGACTCCATCATCGTTTGCTGCATCAA
CTCCTGCACCAGCATGTTTGCCGGATTCGTCATCTTCTCCATCGTGGGCTTCATGGCTCATGTCACCAAG
AGGTCCATAGCTGATGTGGCAGCCTCAGGCCCGGGGCTGGCATTCTTGGCGTACCCTGAGGCTGTGACAC
AGCTACCCATCTCTCCCCTCTGGGCTATCCTCTTCTTCTCCATGCTGCTGATGCTGGGCATTGACAGCCA
GTTCTGTACCGTGGAGGGCTTCATCACTGCCCTGGTGGACGAGTACCCCAGACTTCTCCGCAATCGCCGT
GAACTCTTCATTGCTGCCGTGTGCATCGTGTCCTACCTGATTGGCCTGTCTAACATCACCCAGGGTGGCA
TTTATGTCTTCAAACTGTTTGATTATTACTCTGCCAGCGGCATGAGCTTGCTGTTCCTGGTTTTCTTCGA
GTGTGTCTCCATTTCCTGGTTTTATGGTGTCAACCGGTTCTATGACAACATCCAGGAGATGGTTGGCTCC
AGGCCCTGCATCTGGTGGAAGCTGTGCTGGTCCTTTTTCACACCCATCATTGTGGCGGGCGTGTTTCTCT
TCAGTGCTGTGCAGATGACACCACTCACCATGGGAAGCTATGTTTTCCCCAAGTGGGGCCAGGGCGTGGG
CTGGCTCATGGCTCTGTCCTCCATGGTGCTCATCCCCGGGTACATGGCTTACATGTTCCTCACCCTGAAG
GGCTCCCTGAAGCAGCGTCTCCAGGTCATGATTCAGCCCAGTGAAGATATTGTGCGCCCTGAGAATGGCC
CTGAGCAGCCGCAGGCTGGCAGCTCAGCCAGCAAGGAGGCCTACATCTAG

Translation (599 aa):
MATDNSKVADGQISTEVSEAPVASDKPKTLVVKVQKKAGDLPDRDTWKGRFDFLMSCVGYAIGLGNVWRF
PYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYY
IVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFSNYSLVNTTNMTSAVVEFWERNMHQMTDGLDKPGQI
RWPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLS
DSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTK
RSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRR
ELFIAAVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGS
RPCIWWKLCWSFFTPIIVAGVFLFSAVQMTPLTMGSYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLK
GSLKQRLQVMIQPSEDIVRPENGPEQPQAGSSASKEAYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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