NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20421.1 Public Mus musculus 6 Il17re 23 108 98 CCDS HistoryNCBI Gene:57890Re-query CCDS DB by CCDS ID:20421.1Re-query CCDS DB by GeneID:57890See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053569.6 ENSMUSP00000054378.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053569.6Link to Ensembl Protein Viewer:ENSMUSP00000054378.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053569Re-query CCDS DB by Protein ID:ENSMUSP00000054378
Original member Current member EBI ENSMUST00000101065.7 ENSMUSP00000098626.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101065.7Link to Ensembl Protein Viewer:ENSMUSP00000098626.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101065Re-query CCDS DB by Protein ID:ENSMUSP00000098626
Original member Current member NCBI NM_001034029.2 NP_001029201.1 Accepted alive Link to Nucleotide Sequence:NM_001034029.2Link to Protein Sequence:NP_001029201.1Re-query CCDS DB by Nucleotide ID:NM_001034029Re-query CCDS DB by Protein ID:NP_001029201Link to BLAST:NP_001029201.1
Original member Current member NCBI NM_001034031.2 NP_001029203.1 Accepted alive Link to Nucleotide Sequence:NM_001034031.2Link to Protein Sequence:NP_001029203.1Re-query CCDS DB by Nucleotide ID:NM_001034031Re-query CCDS DB by Protein ID:NP_001029203Link to BLAST:NP_001029203.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029201.1 436 Q8BH06-4 436 100% 0 0
NP_001029203.1 436 Q8BH06-4 436 100% 0 0

Chromosomal Locations for CCDS 20421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113464010 113464021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113464761 113464827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113465715 113465890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113465980 113466027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113466109 113466154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113466253 113466407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113468437 113468505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113468906 113468957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113469030 113469128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113469557 113470143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGTGCATAGAGGCCTCCTACCTGCAAGAGGACACTGTGAGGCGCAAAAAGTGTCCCTTCCAGAGCTGGC
CTGAAGCTTATGGCTCAGACTTCTGGCAGTCAATACGCTTCACTGACTACAGCCAGCACAATCAGATGGT
CATGGCTCTGACACTCCGCTGCCCACTGAAACTGGAGGCCTCCCTCTGCTGGAGGCAGGACCCACTCACA
CCCTGCGAAACCCTTCCCAACGCCACAGCACAGGAGTCAGAAGGATGGTATATCCTGGAGAATGTGGACT
TGCACCCCCAGCTCTGCTTTAAGTTCTCATTTGAAAACAGCAGCCACGTTGAATGTCCCCACCAGAGTGG
CTCTCTCCCATCCTGGACTGTGAGCATGGATACCCAGGCCCAGCAGCTGACGCTTCACTTTTCTTCGAGG
ACATATGCCACCTTCAGTGCTGCCTGGAGTGACCCAGGTTTGGGGCCGGATACCCCCATGCCTCCTGTGT
ACAGCATCAGCCAGACCCAGGGCTCAGTCCCAGTGACGCTAGACCTCATCATCCCCTTCCTGAGGCAGGA
GAATTGCATCCTGGTGTGGAGGTCAGATGTCCATTTTGCCTGGAAGCACGTCTTGTGTCCTGATGTCTCC
CATAGACACCTCGGGCTCTTGATCCTGGCACTGCTGGCTCTCACCGCTCTAGTGGGTGTAGTTCTGGTCC
TCCTCGGCCGGCGCCTACTGCCAGGCTCCGGTCGAACAAGGCCAGTTTTACTCCTACATGCAGCGGACTC
AGAGGCACAGCGACGCCTGGTGGGAGCTTTGGCCGAACTGCTGCGGACGGCGCTGGGAGGTGGACGCGAC
GTGATCGTGGATCTCTGGGAAGGGACGCACGTAGCACGCATTGGACCACTGCCGTGGCTTTGGGCAGCGC
GGGAGCGCGTGGCGCGGGAGCAGGGCACAGTGCTGCTCCTGTGGAACTGTGCGGGTCCCAGCACCGCCTG
CAGCGGTGACCCGCAGGCTGCGTCCCTTCGCACCTTGTTGTGCGCTGCTCCACGTCCGCTGCTGCTCGCC
TACTTCAGTCGCCTCTGCGCCAAAGGTGACATCCCCCGGCCGCTGCGCGCTCTGCCACGCTACCGCCTGC
TTCGTGACCTGCCGCGCCTGCTGAGAGCACTGGATGCTCAGCCTGCCACCCTAGCCTCCAGCTGGAGTCA
CCTTGGGGCTAAGCGGTGCTTGAAAAACCGTCTGGAGCAGTGTCACCTGCTGGAACTTGAGGCTGCCAAA
GATGACTACCAAGGCTCAACCAATAGTCCCTGTGGTTTCAGCTGTCTGTAG

Translation (436 aa):
MCIEASYLQEDTVRRKKCPFQSWPEAYGSDFWQSIRFTDYSQHNQMVMALTLRCPLKLEASLCWRQDPLT
PCETLPNATAQESEGWYILENVDLHPQLCFKFSFENSSHVECPHQSGSLPSWTVSMDTQAQQLTLHFSSR
TYATFSAAWSDPGLGPDTPMPPVYSISQTQGSVPVTLDLIIPFLRQENCILVWRSDVHFAWKHVLCPDVS
HRHLGLLILALLALTALVGVVLVLLGRRLLPGSGRTRPVLLLHAADSEAQRRLVGALAELLRTALGGGRD
VIVDLWEGTHVARIGPLPWLWAARERVAREQGTVLLLWNCAGPSTACSGDPQAASLRTLLCAAPRPLLLA
YFSRLCAKGDIPRPLRALPRYRLLRDLPRLLRALDAQPATLASSWSHLGAKRCLKNRLEQCHLLELEAAK
DDYQGSTNSPCGFSCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH