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Report for CCDS20350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20350.1 Public Mus musculus 6 Vmn1r48 23 108 98 CCDS HistoryNCBI Gene:113845Re-query CCDS DB by CCDS ID:20350.1Re-query CCDS DB by GeneID:113845See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20350.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073415.1 ENSMUSP00000073121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073415.1Link to Ensembl Protein Viewer:ENSMUSP00000073121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000073415Re-query CCDS DB by Protein ID:ENSMUSP00000073121
Original member Current member NCBI NM_053218.1 NP_444448.1 Accepted alive Link to Nucleotide Sequence:NM_053218.1Link to Protein Sequence:NP_444448.1Re-query CCDS DB by Nucleotide ID:NM_053218Re-query CCDS DB by Protein ID:NP_444448Link to BLAST:NP_444448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444448.1 302 Q9EQ52 302 100% 0 0

Chromosomal Locations for CCDS 20350.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90035933 90036841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGAATGAGAACAGCAGACTACACACTCATTCTAACATAAGGAACACCTTTTTCTCTGAAATTGGCATTG
GGATCTCAGGCAACAGTTTCCTTCTTCTCTTCCATATCATCAAGTTCTTTCGTGGGCACAGGCCCAGACT
CACTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTACTGATGCTACTGGTTGCAGCGGTCATAGCC
ACAGACATTTTTATTTCTTGGAGGGGATGGAATGACATCATATGTAAATTTCTTGTCTACCTGTACAGAA
GTTTGAGGGGTCTCTCCCTTTGTACCACCAGCATGTTGAGTGTCCTCCAGGCCATAATCCTCAGTCCCAG
AAGCTACTGTTTAGCTAAGTTCAAGCGCAAATCTTCTCATAACATCTCCTGTGCCATTATTTTCCTGAGT
GTCCTCTATATGTCAATTAGCAGTCACCTCCTTATATCCATCACTGCCACCCCCAATTTGACCATGAATG
ACTTTCTTTATGTTTCTCAGTCCTGCTCTCTTCTACCCTTGAGTTACCTCATGCAAAGCATATATTCTAC
ACTGCTGGTCCTCAGGGAAGTCTTTCTTATTGGTCTCATGGTCCTCTCAACTTCATACATGGTGGCCCTC
TTGTACATGCACAGGAAACAGGCCCAGAATCTTCAGGGTACCAGTCTTTCCCTCAAAGCATCCGCAGAGC
AAAGGGCCACCCAGACCATCCTGATGCTCATGACCTTCTTTGTGCTGATGTCCATCTTTGACAGCATTGT
CTCCTGCTCAAGAACTATGTTCCTGGATGATCCAACATCTTACTCTATCCATATCTTTGTGATGCACATC
TATGCCACAGTCAGCCCTTTTGTGTTTATAAGCACTGAAAAACATATAGTTAATATTTTGAGAGGGTGA

Translation (302 aa):
MNENSRLHTHSNIRNTFFSEIGIGISGNSFLLLFHIIKFFRGHRPRLTDLPIGLLSLIHLLMLLVAAVIA
TDIFISWRGWNDIICKFLVYLYRSLRGLSLCTTSMLSVLQAIILSPRSYCLAKFKRKSSHNISCAIIFLS
VLYMSISSHLLISITATPNLTMNDFLYVSQSCSLLPLSYLMQSIYSTLLVLREVFLIGLMVLSTSYMVAL
LYMHRKQAQNLQGTSLSLKASAEQRATQTILMLMTFFVLMSIFDSIVSCSRTMFLDDPTSYSIHIFVMHI
YATVSPFVFISTEKHIVNILRG


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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