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Report for CCDS20275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20275.1 Public Mus musculus 6 Wdr54 23 108 98 CCDS HistoryNCBI Gene:75659Re-query CCDS DB by CCDS ID:20275.1Re-query CCDS DB by GeneID:75659See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153148.7 ENSMUSP00000116608.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153148.7Link to Ensembl Protein Viewer:ENSMUSP00000116608.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153148Re-query CCDS DB by Protein ID:ENSMUSP00000116608
Original member Current member NCBI NM_001362119.1 NP_001349048.1 Accepted alive Link to Nucleotide Sequence:NM_001362119.1Link to Protein Sequence:NP_001349048.1Re-query CCDS DB by Nucleotide ID:NM_001362119Re-query CCDS DB by Protein ID:NP_001349048Link to BLAST:NP_001349048.1
Original member Current member NCBI NM_023790.2 NP_076279.1 Accepted alive Link to Nucleotide Sequence:NM_023790.2Link to Protein Sequence:NP_076279.1Re-query CCDS DB by Nucleotide ID:NM_023790Re-query CCDS DB by Protein ID:NP_076279Link to BLAST:NP_076279.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349048.1 334 Q9R0D8 334 100% 0 0
NP_076279.1 334 Q9R0D8 334 100% 0 0

Chromosomal Locations for CCDS 20275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83152766 83152897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83152976 83153050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83153254 83153416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83153517 83153617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83154500 83154627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83154922 83154975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83155070 83155136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83155478 83155540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83155649 83155870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGTTCCGCCGCGAGCGCTCCATCCCACTTCGTAGCTCTGCCGCCGCCCTGTCTAACAACCTCAGTGTAC
TGCAGCTGCCAGCCCGTGATCTCACGCATTTTGGGGTGGTTCATGGACCGAGCGCCCAGCTTCTCAGTGC
TGCCCCTGAGGGTGTGCCCTTGGCCCAGCGCCAGCTCCACGTTAAAGAGGGTGCTGGAGTGAGTCCCCCA
CTTATCACTCAGGTTCACTGGTGTGTCCTCCCCTTCAGAGTACTGCTGGTCCTCACCTCGCATCGAGGGA
TACAGATGTATGAGTCTGATGGCTCCGTCATGGTTTATTGGCACGCCTTGGACTCAGGCGATGCTTCTTC
AGTACAGGCTATGTTTGCCCGAGGAATTGCTGCCAGCGTCCACTTCATCTGTGTGGGAACGTGTTCCGGT
CGAGTACTGGTCTTTGATATCCCCGCTAAGGGTCCCAACATTGTACTCAGCGAGGAACTGGCTGGGCACC
AGACACCAATCACAGATATTGCCACTGAGCGTGCCCAGGGGCAGGATGGTGTTGCTGACATGGTGACAGC
AGATGACTCGGGTGTCCTGTGTGTCTGGAGGTCGGGACCTGAGTTCACCTTACTGACCCGAATACCAGGA
TTCGGGGTCCCATGCCCCTCTGTGCAGCTGTGGCAGGGGATCGTGGCAGCAGGGTATGGAAATGGGCAAG
TGCGCCTGTATGATGCCAGCACAGGGGCCCTCCACGTCCAGATCAGTGCCCACGCCCGGACCATCTCTGC
CCTGGACCTCGCTCCAGAGGTCGGCAAGCTACTGTCTGCAGCTGAGGACACCTTTGTGCACATCTGGAAG
CTGAACAGAAACCCAGAAAGTGGCTCTATTGAGGTGGAACACTGCCATGGTGAATGTATTTCTGACACCC
AGGTGTGTGGTGCTCGGTTCTGTGATCCATTGGGCAGCTCCTTTGCTGTGACAGGTTATGACCTGGCTGA
GATCCTGAGATTTGGCACTGTCTGA

Translation (334 aa):
MFRRERSIPLRSSAAALSNNLSVLQLPARDLTHFGVVHGPSAQLLSAAPEGVPLAQRQLHVKEGAGVSPP
LITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASSVQAMFARGIAASVHFICVGTCSG
RVLVFDIPAKGPNIVLSEELAGHQTPITDIATERAQGQDGVADMVTADDSGVLCVWRSGPEFTLLTRIPG
FGVPCPSVQLWQGIVAAGYGNGQVRLYDASTGALHVQISAHARTISALDLAPEVGKLLSAAEDTFVHIWK
LNRNPESGSIEVEHCHGECISDTQVCGARFCDPLGSSFAVTGYDLAEILRFGTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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