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Report for CCDS20206.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20206.2 Public Mus musculus 6 Qrfprl 23 108 98 CCDS HistoryNCBI Gene:243407Re-query CCDS DB by CCDS ID:20206.2Re-query CCDS DB by GeneID:243407See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20206.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20206.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170608.7 ENSMUSP00000130225.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170608.7Link to Ensembl Protein Viewer:ENSMUSP00000130225.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170608Re-query CCDS DB by Protein ID:ENSMUSP00000130225
Original member Current member NCBI NM_175524.4 NP_780733.2 Accepted alive Link to Nucleotide Sequence:NM_175524.4Link to Protein Sequence:NP_780733.2Re-query CCDS DB by Nucleotide ID:NM_175524Re-query CCDS DB by Protein ID:NP_780733Link to BLAST:NP_780733.2

Chromosomal Locations for CCDS 20206.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 65381294 65381630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65441187 65441345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65447361 65447422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65452880 65453115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65454909 65455006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65456090 65456448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGTCGTGGAACTTGACCGCGGAGCAGCTCTCGGCGCTGCTTCGGCTGCACAACCTGACGCGCGCTCAGT
TCATCGCGCACTATGGGCTGCGGCCACTGGTGCTCACCCCGCAGCTTCCCGCGCGCGCCAGGCTGGCCCT
CCTGCTGGTCGGCATGCTCATCTTTGCCCTGGCGCTCTTCGGCAACGCCCTGGTAGTCTATGTGGTGACC
CGCAGCAAGGCCATGCGCACCGTCACCAACATCTTCATCTGCTCCCTGGCACTCAGCGACCTGCTCATCG
TCTTCTTCTGCATCCCGGTCACCATGCTCCAGAACGTCTCGGACACCTGGCTGGGGGGTGCCTTCATTTG
CAAAATGGTCCCATTTGTCCAGTGCACTGCCATTGTGACAGAAATCCTTACTATGACCTGCATTGCTGTG
GAAAGGCACCAGGGACTTGTCCATCCTTTTAAAATGAAGCGGCAGTACACCAATCAAAGAGCTTTCACAA
TGCTAGGTGTGGTGTGGCTGGTGGCCATCATCATAGGATCACCCATGTGGCATGTGCAGCGACTTGAGAT
TAAGTATGACTTCCTATATGAAAAAGAACACATCTGCTGCCTGGAAGAGTGGAGCAGCCCCGTGCACCAG
AAGATCTACACCACCTTCATCCTTGTCACCCTCTTCCTGCTACCACTGTTGCTGCTCTCTGTCCTCTACG
GGAAAATCGGTTATGAGCTTTGGATCAAGAAAAGAATCGGGGATGGCTCAGTGCTCCGAACTATTCATGG
AAAAGAAATGTTCAAAATAGCCAGAAAGAAGAAGCGAGCTGTGATCATGATGGTGACAGTCGTGGTTCTC
TTTGCTGTGTGCTGGGCACCTTTCCACATCGTTCACATGATGATTGAATACAGTAATTTTGAAAAGGAAT
ATGATGAAGTCACAATCAAGATGATTTTTGCTATAGTGCAAATAATTGGATTTTTCAACTCCATCTGTAA
TCCCATTATTTATGCACTTATGAATGAAAACTTCAAAAAAAACTTTGTGTCTGCCGTTTGCTATTGCATT
GTGAAGGAAACACCTTCTTCAGCACGGAAGCATGGAAGTTCAGGAGCTATGGTGATGCACAGGAGGGCAA
AGTTAGCTGCAAGAGAGAATCCTGTAGAGATCAAAGGAGAAGCATTTGGGGGCAGCAACATCGATATCAA
GTGGTGTGAACAGCCAGAAAAGAAGAAGAGGAGATCAAAAGTGGCATCTTGTCCTCTTTAG

Translation (416 aa):
MSWNLTAEQLSALLRLHNLTRAQFIAHYGLRPLVLTPQLPARARLALLLVGMLIFALALFGNALVVYVVT
RSKAMRTVTNIFICSLALSDLLIVFFCIPVTMLQNVSDTWLGGAFICKMVPFVQCTAIVTEILTMTCIAV
ERHQGLVHPFKMKRQYTNQRAFTMLGVVWLVAIIIGSPMWHVQRLEIKYDFLYEKEHICCLEEWSSPVHQ
KIYTTFILVTLFLLPLLLLSVLYGKIGYELWIKKRIGDGSVLRTIHGKEMFKIARKKKRAVIMMVTVVVL
FAVCWAPFHIVHMMIEYSNFEKEYDEVTIKMIFAIVQIIGFFNSICNPIIYALMNENFKKNFVSAVCYCI
VKETPSSARKHGSSGAMVMHRRAKLAARENPVEIKGEAFGGSNIDIKWCEQPEKKKRRSKVASCPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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