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Report for CCDS20128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20128.1 Public Mus musculus 6 Pals2 23 108 98 CCDS HistoryNCBI Gene:56524Re-query CCDS DB by CCDS ID:20128.1Re-query CCDS DB by GeneID:56524See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20128.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036236.14 ENSMUSP00000039314.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036236.14Link to Ensembl Protein Viewer:ENSMUSP00000039314.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036236Re-query CCDS DB by Protein ID:ENSMUSP00000039314
Original member Current member EBI ENSMUST00000204545.2 ENSMUSP00000144737.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204545.2Link to Ensembl Protein Viewer:ENSMUSP00000144737.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204545Re-query CCDS DB by Protein ID:ENSMUSP00000144737
Original member NCBI NM_001361247.1 NP_001348176.1 Updated not alive Link to Nucleotide Sequence:NM_001361247.1Link to Protein Sequence:NP_001348176.1Re-query CCDS DB by Nucleotide ID:NM_001361247Re-query CCDS DB by Protein ID:NP_001348176
Current member NCBI NM_001361247.2 NP_001348176.1 Accepted alive Link to Nucleotide Sequence:NM_001361247.2Link to Protein Sequence:NP_001348176.1Re-query CCDS DB by Nucleotide ID:NM_001361247Re-query CCDS DB by Protein ID:NP_001348176Link to BLAST:NP_001348176.1
Original member NCBI NM_019939.2 NP_064323.2 Updated not alive Link to Nucleotide Sequence:NM_019939.2Link to Protein Sequence:NP_064323.2Re-query CCDS DB by Nucleotide ID:NM_019939Re-query CCDS DB by Protein ID:NP_064323
Current member NCBI NM_019939.3 NP_064323.2 Accepted alive Link to Nucleotide Sequence:NM_019939.3Link to Protein Sequence:NP_064323.2Re-query CCDS DB by Nucleotide ID:NM_019939Re-query CCDS DB by Protein ID:NP_064323Link to BLAST:NP_064323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348176.1 539 Q9JLB0-2 539 100% 0 0
NP_064323.2 539 Q9JLB0-2 539 100% 0 0

Chromosomal Locations for CCDS 20128.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50145776 50145892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50158682 50158834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50162586 50162735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50163422 50163649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50178389 50178520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50180176 50180275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50180591 50180659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50183710 50183871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50194526 50194728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50196514 50196642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50198154 50198330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGCAGCAAGTTTTGGAAAACCTTACAGAGCTGCCCTCATCTACAGGAGCAGAGGAGATAGACCTAATTT
TCCTCAAGGGGATTATGGAGAATCCTATTGTGAAGTCACTTGCTAAGGCTCATGAGAGACTTGAAGATTC
AAAGTTAGAAGCTGTGAGTGACAATAACTTGGAATTAGTGAATGAAATTCTTGAAGATATCACTCCTCTG
ATTAGTGTGGATGAAAATGTGGCAGAGCTAGTTGGGATACTCAAGGAGCCTCACTTCCAGTCGCTCCTGG
AGGCCCATGATATTGTGGCATCAAAGTGTTATGATTCGCCTCCTTCCAGCCCAGAAATGAATATTCCTTC
TCTCAATAATCAATTGCCAGTAGATGCCATCCGTATTCTCGGTATTCACAAAAAAGCTGGAGAGCCATTG
GGTGTAACATTTAGAGTTGAAAATAATGATCTGGTAATCGCCCGAATCCTTCATGGAGGAATGATAGATC
GACAAGGTCTGCTTCACGTGGGAGATATCATTAAGGAAGTCAATGGTCATGAGGTTGGAAACAATCCAAA
GGAATTACAAGAATTATTGAAAAATATTAGTGGAAGTGTCACCCTAAAAATTTTACCAAGTTACAGAGAT
ACTATTACTCCTCAGCAGGTATTTGTCAAGTGTCATTTTGATTATAATCCATTCAATGATAACCTGATAC
CCTGCAAAGAAGCAGGACTAAAATTTTCCAAAGGAGAAATTCTTCAGATTGTAAACAGAGAAGACCCAAA
TTGGTGGCAGGCTAGCCATGTGAAAGAGGGAGGAAGTGCTGGTCTGATTCCAAGCCAGTTCCTGGAAGAG
AAGAGAAAGGCATTTGTTCGCCGAGACTGGGACAATTCAGGACCCTTTTGTGGAACTATAAGCAACAAGA
AAAAGAAAAAGATGATGTACCTCACAACCAGGAATGCAGAGTTTGATCGTCATGAAATTCAGATCTATGA
GGAAGTAGCAAAAATGCCACCCTTCCAACGGAAAACGTTAGTTTTGATCGGAGCTCAAGGTGTGGGCAGA
AGGAGCTTGAAAAACAGGTTCATAGTACTGAATCCTGCTAGATTTGGAACAACGGTGCCATTTACTTCAC
GGAAGCCAAGAGAAGACGAAAAGGATGGACAAGCATATAAATTTGTGTCCCGATCAGAGATGGAAGCAGA
TATTAAGGCTGGGAAGTATTTGGAGCATGGGGAGTACGAAGGAAACCTGTATGGAACCAAGATCGACTCT
ATTCTCGAGGTTGTCCAGACTGGGCGGACTTGCATTTTGGACGTCAACCCACAAGCACTGAAAGTGTTAA
GGACTTCTGAATTCATGCCTTATGTGGTGTTTATTGCTGCTCCAGAGCTAGAGACCTTGCGTGCCATGCA
CAAGGCTGTGGTGGATGCGGGAATCACCACCAAGCTTTTGACGGACTCTGACTTGAAGAAAACAGTGGAT
GAAAGTGCCCGAATTCAGAGAGCATACAACCACTACTTTGATTTGATCATCGTAAATGACAATCTAGACA
AAGCCTTTGAGAAACTACAAACTGCCATTGAGAAACTGAGGATGGAGCCACAGTGGGTCCCAATTAGCTG
GGTGTACTGA

Translation (539 aa):
MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDITPL
ISVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNIPSLNNQLPVDAIRILGIHKKAGEPL
GVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRD
TITPQQVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEE
KRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGR
RSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDS
ILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVD
ESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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