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Report for CCDS20091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20091.1 Public Mus musculus 6 Or2a20 23 108 98 CCDS HistoryNCBI Gene:258366Re-query CCDS DB by CCDS ID:20091.1Re-query CCDS DB by GeneID:258366See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076752.3 ENSMUSP00000076039.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076752.3Link to Ensembl Protein Viewer:ENSMUSP00000076039.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000076752Re-query CCDS DB by Protein ID:ENSMUSP00000076039
Original member Current member EBI ENSMUST00000216562.2 ENSMUSP00000149678.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216562.2Link to Ensembl Protein Viewer:ENSMUSP00000149678.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000216562Re-query CCDS DB by Protein ID:ENSMUSP00000149678
Original member Current member NCBI NM_146369.1 NP_666481.1 Accepted alive Link to Nucleotide Sequence:NM_146369.1Link to Protein Sequence:NP_666481.1Re-query CCDS DB by Nucleotide ID:NM_146369Re-query CCDS DB by Protein ID:NP_666481Link to BLAST:NP_666481.1

Chromosomal Locations for CCDS 20091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43216915 43217880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGAGGAAAATCAGACCATGGTCACAGAGTTCGTCCTGCTGGGATTCTGTCTTGGCCCGAGGATTCACC
TAGTTCTTTTTCTGCTTTTCTCTCTCTTCTATACTCTCACCATACTGGGGAATGGGACTATCCTTGCAAT
GATCTGCCTGGACTCCAGACTCCACACTCCCATGTACTTCTTCCTGTCCCACCTGGCCATTGTCGATATG
GCCTATGCCTGCAACACAGTGCCTCAGACACTCATAAACCTCTTGGATGAGACCAGGCCCATCACCTTTG
CTGGATGCATGACACAGACCTTTCTCTTCTTGGCTTTTGCCCACACTGAATGTGTGCTCCTTGTTGTGAT
GTCCTATGACCGGTATGTAGCTATCTGCCACCCGCTACACTACACTGTCATCATGAACTGGAGAGTGTGT
ACCATTCTGGCTGCTGTTTCCTGGATATTTAGCTTTCTCCTTGCTCTGGTCCATTTAGTTCTCATCCTGA
GGCTGCCCTTCTGTGGACCTCATGAAATCAATCACTTCTTCTGTGAAATCCTGTCTGTCCTCAAGCTGGC
CTGTGCTGACACAACACTCAATCAGGTCGTTATCTTTGCAGCTTGTGTGTTCATATTAGTGGCCCCCCTA
TGCTTTGTACTAGTCTCCTACACACGCATCCTGGTGGCCATCCTGAGGATCCAGTCAGGGGAGGGACGCA
GAAAGGCCTTCTCTACCTGTTCCTCCCACCTCTGTGTGGTAGGGCTCTTCTTTGGCAGTGCCATTGTCAT
GTACATGGCCCCCAAGTCCCAGCACCCAGAGGAGCAGCAGAAGGTTCTTTTCCTGTTTTACAGTTTTTTC
AACCCCATGCTGAACCCCCTAATCTACAGTCTGAGGAATGCTGAGGTGAAGGGCGCCCTCAAGAGGTCAC
TGTGCAAAGAAAGTCATTCCTGGTTGGTGTGGTGTTCGGACCATAAATCTTGGTAG

Translation (321 aa):
MEENQTMVTEFVLLGFCLGPRIHLVLFLLFSLFYTLTILGNGTILAMICLDSRLHTPMYFFLSHLAIVDM
AYACNTVPQTLINLLDETRPITFAGCMTQTFLFLAFAHTECVLLVVMSYDRYVAICHPLHYTVIMNWRVC
TILAAVSWIFSFLLALVHLVLILRLPFCGPHEINHFFCEILSVLKLACADTTLNQVVIFAACVFILVAPL
CFVLVSYTRILVAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSQHPEEQQKVLFLFYSFF
NPMLNPLIYSLRNAEVKGALKRSLCKESHSWLVWCSDHKSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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