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Report for CCDS2009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2009.1 Public Homo sapiens 2 MAL 24 110 108 CCDS HistoryNCBI Gene:4118Re-query CCDS DB by CCDS ID:2009.1Re-query CCDS DB by GeneID:4118See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2009.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349807.3 ENSP00000322860.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000349807.3Link to Ensembl Protein Viewer:ENSP00000322860.3Re-query CCDS DB by Nucleotide ID:ENST00000349807Re-query CCDS DB by Protein ID:ENSP00000322860
Original member Current member NCBI NM_022440.3 NP_071885.1 Accepted alive Link to Nucleotide Sequence:NM_022440.3Link to Protein Sequence:NP_071885.1Re-query CCDS DB by Nucleotide ID:NM_022440Re-query CCDS DB by Protein ID:NP_071885Link to BLAST:NP_071885.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071885.1 55 P21145-4 55 100% 0 0

Chromosomal Locations for CCDS 2009.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 95025793 95025885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 95053381 95053455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (168 nt):
ATGGCCCCCGCAGCGGCGACGGGGGGCAGCACCCTGCCCAGTGGCTTCTCGGTCTTCACCACCTTGCCCG
ACTTGCTCTTCATCTTTGAGTTTGTGTTCTCCTACATAGCCACTCTGCTCTACGTGGTCCATGCGGTGTT
CTCTTTAATCAGATGGAAGTCTTCATAA

Translation (55 aa):
MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFVFSYIATLLYVVHAVFSLIRWKSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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