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Report for CCDS2005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2005.1 Public Homo sapiens 2 TEKT4 24 110 108 CCDS HistoryNCBI Gene:150483Re-query CCDS DB by CCDS ID:2005.1Re-query CCDS DB by GeneID:150483See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2005.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295201.5 ENSP00000295201.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295201.5Link to Ensembl Protein Viewer:ENSP00000295201.4Re-query CCDS DB by Nucleotide ID:ENST00000295201Re-query CCDS DB by Protein ID:ENSP00000295201
Original member Current member NCBI NM_144705.4 NP_653306.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144705.4Link to Protein Sequence:NP_653306.1Re-query CCDS DB by Nucleotide ID:NM_144705Re-query CCDS DB by Protein ID:NP_653306Link to BLAST:NP_653306.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653306.1 435 Q8WW24 435 100% 0 0

Chromosomal Locations for CCDS 2005.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 94871580 94872077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94873520 94873590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94873965 94874108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94874776 94874998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94875588 94875742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94876553 94876769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGCGCAGACAGTGCCGCCCTGCGAGCTGCCCTGCAAAGAGTACGACGTGGCCCGTAACACGGGCGCCT
ACACGTCCTCCGGCCTGGCCACCGCCAGCTTCCGCACCTCCAAGTACCTGCTGGAGGAGTGGTTCCAGAA
CTGCTATGCTCGCTACCACCAGGCCTTCGCCGACCGCGACCAGTCGGAGCGGCAGCGGCACGAGAGCCAG
CAGCTGGCCACAGAGACCCAGGCGCTGGCGCAGCGCACGCAGCAAGACTCCACGCGCACAGTGGGCGAGC
GACTGCAGGACACGCACAGCTGGAAGTCGGAGCTGCAGCGTGAGATGGAGGCGCTGGCTGCGGAGACCAA
CTTGCTCCTGGCCCAGAAGCAACGGCTGGAGCGCGCCCTGGACGCCACAGAGGTGCCCTTCTCCATCACC
ACTGACAACCTGCAGTGCCGTGAGCGCCGCGAGCACCCCAACCTCGTGCGCGACCATGTGGAAACGGAGC
TGCTGAAGGAAGCCGAGCTCATCCGGAACATTCAGGAGCTGCTGAAGAGAACCATCATGCAAGCAGTGAG
CCAGATCCGACTGAACCGGGAGCACAAGGAGACCTGCGAGATGGACTGGTCAGACAAGATGGAGGCCTAC
AACATCGACGAGACCTGCGGGCGCCACCACAGCCAGAGCACCGAGGTGCAGGCTCATCCGTACTCCACCA
CCTTCCAAGAGAGCGCCTCCACCCCGGAGACCCGGGCCAAGTTCACGCAGGACAATCTGTGCCGTGCCCA
GCGCGAGCGCCTGGCCTCGGCCAACCTGCGGGTGCTGGTGGACTGCATCCTTCGCGACACCTCCGAGGAC
CTGCGGCTCCAGTGCGACGCCGTGAACCTGGCCTTCGGGCGCCGCTGTGAGGAGCTGGAGGACGCGCGGT
ACAAGCTGCATCACCACCTGCACAAGACACTGCGGGAAATCACAGATCAGGAACACAACGTGGCGGCACT
GAAGCAGGCCATCAAGGACAAAGAGGCACCTCTGCACGTAGCCCAGACCCGGCTGTACCTGCGCTCGCAC
CGGCCCAACATGGAGCTGTGCCGTGACGCAGCCCAGTTCAGGCTGTTGAGTGAGGTGGAGGAGCTGAACA
TGTCCCTCACAGCACTGCGAGAGAAGCTTCTAGAAGCGGAGCAGTCCCTGCGCAACCTCGAGGACATCCA
CATGAGCCTGGAGAAGGACATTGCCGCCATGACCAACAGTCTCTTCATCGACCGCCAGAAGTGCATGGCC
CATCGTACTCGCTACCCCACCATCCTGCAGCTGGCTGGCTACCAGTGA

Translation (435 aa):
MAQTVPPCELPCKEYDVARNTGAYTSSGLATASFRTSKYLLEEWFQNCYARYHQAFADRDQSERQRHESQ
QLATETQALAQRTQQDSTRTVGERLQDTHSWKSELQREMEALAAETNLLLAQKQRLERALDATEVPFSIT
TDNLQCRERREHPNLVRDHVETELLKEAELIRNIQELLKRTIMQAVSQIRLNREHKETCEMDWSDKMEAY
NIDETCGRHHSQSTEVQAHPYSTTFQESASTPETRAKFTQDNLCRAQRERLASANLRVLVDCILRDTSED
LRLQCDAVNLAFGRRCEELEDARYKLHHHLHKTLREITDQEHNVAALKQAIKDKEAPLHVAQTRLYLRSH
RPNMELCRDAAQFRLLSEVEELNMSLTALREKLLEAEQSLRNLEDIHMSLEKDIAAMTNSLFIDRQKCMA
HRTRYPTILQLAGYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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