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Report for CCDS20042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20042.1 Public Mus musculus 6 1810009J06Rik 23 108 98 CCDS HistoryNCBI Gene:73626Re-query CCDS DB by CCDS ID:20042.1Re-query CCDS DB by GeneID:73626See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076638.6 ENSMUSP00000075935.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076638.6Link to Ensembl Protein Viewer:ENSMUSP00000075935.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076638Re-query CCDS DB by Protein ID:ENSMUSP00000075935
Original member Current member NCBI NM_023707.3 NP_076196.1 Accepted alive Link to Nucleotide Sequence:NM_023707.3Link to Protein Sequence:NP_076196.1Re-query CCDS DB by Nucleotide ID:NM_023707Re-query CCDS DB by Protein ID:NP_076196Link to BLAST:NP_076196.1

Chromosomal Locations for CCDS 20042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 40964789 40964828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40966163 40966325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40966607 40966860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40967410 40967546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 40968183 40968332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGAAGATCATCACCTTCTTCACTTTTCTGGGAGCTGCTGTTGCTCTCCCAGCTAACAGTGATGACAAGA
TTGTTGGAGGCTACACATGTCCGAAGCATTCGGTTCCTTACCAGGTGTCTCTGAATGATGGCATTAGCCA
TCAGTGTGGTGGCTCCCTTATCAGTGATCAGTGGGTACTGTCTGCTGCTCACTGCTACAAAAGAAGACTC
CAGGTTCGCCTTGGTGAACACAATATTGATGTCCTTGAGGGTGGTGAGCAATTTATTGATGCAGAAAAGA
TCATTCGACACCCAGACTATAACAAGGACACTGTGGATAATGACATCATGCTGATTAAATTGAAGTCACC
TGCCATCCTTAACTCCCAAGTATCCACAGTCTCTCTGCCCAGATCCTGTGCATCTACAAATGCTCAGTGC
CTTGTTTCTGGCTGGGGAAATACTGTGAGCATTGGTGGAAAATACCCAGCACTCCTTCAATGTCTGGAAG
CTCCTGTCCTCTCGGCCAGTTCTTGCAAAAAATCCTACCCAGGCCAGATTACCAGCAATATGTTCTGCCT
GGGATTCCTGGAGGGTGGAAAGGACTCCTGTGATGGTGATTCTGGTGGACCTGTCGTCTGCAATGGAGAG
ATCCAGGGTATTGTCTCCTGGGGTTCAGTCTGTGCAATGAGAGGGAAGCCTGGTGTTTACACCAAAGTCT
GCAACTACCTAAGCTGGATTCAGGAGACCATGGCGAACAACTGA

Translation (247 aa):
MKIITFFTFLGAAVALPANSDDKIVGGYTCPKHSVPYQVSLNDGISHQCGGSLISDQWVLSAAHCYKRRL
QVRLGEHNIDVLEGGEQFIDAEKIIRHPDYNKDTVDNDIMLIKLKSPAILNSQVSTVSLPRSCASTNAQC
LVSGWGNTVSIGGKYPALLQCLEAPVLSASSCKKSYPGQITSNMFCLGFLEGGKDSCDGDSGGPVVCNGE
IQGIVSWGSVCAMRGKPGVYTKVCNYLSWIQETMANN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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