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Report for CCDS19897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19897.1 Public Mus musculus 6 Ppp1r9a 23 108 98 CCDS HistoryNCBI Gene:243725Re-query CCDS DB by CCDS ID:19897.1Re-query CCDS DB by GeneID:243725See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035813.8 ENSMUSP00000046906.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035813.8Link to Ensembl Protein Viewer:ENSMUSP00000046906.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000035813Re-query CCDS DB by Protein ID:ENSMUSP00000046906
Original member Current member NCBI NM_001363809.1 NP_001350738.1 Accepted alive Link to Nucleotide Sequence:NM_001363809.1Link to Protein Sequence:NP_001350738.1Re-query CCDS DB by Nucleotide ID:NM_001363809Re-query CCDS DB by Protein ID:NP_001350738Link to BLAST:NP_001350738.1
Original member Current member NCBI NM_181595.4 NP_853626.1 Accepted alive Link to Nucleotide Sequence:NM_181595.4Link to Protein Sequence:NP_853626.1Re-query CCDS DB by Nucleotide ID:NM_181595Re-query CCDS DB by Protein ID:NP_853626Link to BLAST:NP_853626.1

Chromosomal Locations for CCDS 19897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 4905447 4906844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5045936 5046068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5057458 5057578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5063991 5064095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5077480 5077615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5100432 5100587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5111000 5111053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5113601 5113830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5115119 5115215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5115309 5115480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5134017 5134174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5156121 5156240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5157004 5157027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5158089 5158271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5159552 5159752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3288 nt):
ATGTTGAAGGCGGAATCTTCAGGGGAGCGGACCACTCTCAGAAGTGCCTCTCCTCACAGGAATGCGTACA
GAACAGAGTTCCAGGCACTGAAAAGTACTTTTGACAAACCCAAGTCAGATGGGGAACAGAAAACGAAAGA
AGGTGAGGGCTCCCAGCAGAGCAGAGGTAGAAAGTATGGCTCCAATGTCAACAGAATTAAAAATCTATTT
ATGCAGATGGGTATGGAACCCAGCGAGAATGCTGCTATCATTGCCAAAACCAGGGGGAAAGGTAGGCCCT
CGTCCCCTCAGAGAAGAATGAAGCCCAAAGAGTTTGTGGAGAAAACGGATGGCTCAGTGGTTAAGTTGGA
GTCCTCTGTCTCTGAACGAATCAGTAGATTTGACACAATGCATGATGGCCCTTCGTATGCTAAGTTCACG
GAGACTCGAAAGATGTTTGAGAGAAGTGTGCATGAGTCAGGGCAAAACCATCGCTATTCCCCAAAGAAAG
AGAAAGGTGGAGGGACTGAACCACAGGATGAGTGGGGTGGCTCCAAGTCCAACAGAGGCAGCAGTGATTC
CTTGGACAGCCTGAGCCCCCGGACGGAAGCGGTCTCTCCTACTGTGAGTCAGCTGAGTGCTGTGTTTGAG
AACAGTGAGCCTCCAGGTGCTCTCACTTCTGGGAAGGCTGAGAGCGCTGACTACTCGGTGACCGGGCACT
ACCCCCTCAATTTACCATCTGTTACCGTCACCAATCTGGATACCTTTGGCCGTCTCAAGGATTCTAATTC
GAAGCCTCCATCAAACAAACAAGATACTGATACAGAGGATGCTCAGAAGAGCGATGCTGTGCCAGTACCG
GAAGTGGCTCAGAAAGGTACCTCTTTAGCTTCATTGCCTAGTGAAGAGAGCCAGCTGAGCACGGAAGCCG
AGGACGTCACAACAGCTCAACCAGAGGCTCTGGACAGCACTGATAAAGACAGTCCTGAGGAACCCTCTGC
TGAAAACCAGGCAATGCCAAAGTCTCATATCCTTTCCCCACGGAACGAGCCGTTAGAAGATGCTGAAGCT
AATGTGGTTGGGAGTGAGAGAGCTCAGCATCAGAAGAAAGACCTGACAGGTGGTGACCTAACCTCCCCTG
ATGCTTCTGCATCCAGCTGTGGAAGAGAAGTACCTGAAGACTCAAACAGTTTTGAGAGTTCCCACGTATA
CATGCATAGTGACTATAACGTGTATAGGGTGAGATCCAGGTATAACTCAGACTGGGGAGAGACAGGCACG
GAGCAAGATGAGGAGGAAGACAGTGACGAGAACAATTATTACCAGCCTGATATGGAATACTCGGAGATAG
TTGGCTTGCCGGAAGAAGAAGAAATCCCAGCAAATAGGAAAATTAAGTTTAGTTGTGCTCCGATTAAGGT
TTTCAACACATACTCCAATGAAGACTATGACCGGAGAAATGACGACGTTGACCCTGTAGCCGCATCTGCT
GAGTATGAGCTTGAAAAGCGAGTAGAAAAACTGGAACTTTTCCCAGTGGAACTGGAGAAAGACGAGGACG
GGCTGGGCATAAGCATCATTGGAATGGGCGTTGGTGCTGATGCTGGATTGGAGAAGCTGGGGATATTTGT
CAAGACAGTGACTGACGGAGGTGCTGCTCAGCGGGATGGCAGGATTCAAGTCAATGACCAGATTGTGGAA
GTTGATGGAATCAGCCTGGTGGGGGTCACACAGAATTTTGCTGCAACCGTTCTGCGGAATACCAAGGGCA
ACGTCAGATTCGTTATTGGACGAGAAAAACCAGGACAAGTGAGTGAGGTTGCCCAGTTGATCAGCCAGAC
CCTGGAACAAGAGCGGCGACAGCGGGAGCTTCTGGAGCGTCACTATGCCCAGTATGATGCTGACGACGAT
GAGACTGGAGAGTATGCCACTGATGAAGAAGAGGATGAGGGCGGGCCTATTCTTCCTAGTGGTGACGTGG
CCATTGAGGTCTTTGAGCTGCCTGAGAACGAGGACATGTTTTCCCCATCTGACCTGGACACAAGCAAGCT
CAGCCACAAGTTCAAAGAGTTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACC
AAGCTTCAAGCAGCCGAAAATGAGAAAGTAAGGTGGGAACTAGAAAAGAACCAACTGCAACAGAATATAG
AAGAGAATAAAGAACGGATGCTGAAGTTGGAGAGCTACTGGATCGAGGCTCAGACATTATGTCATACGGT
GAATGAGCATCTCAAAGAGACTCAGAGCCAGTACCAAGCCCTGGAAAAGAAATACAACAAAGCAAAGAAG
CTGATCAAAGACTTCCAGCAAAAAGAGCTCGATTTCATCAAGAGACAGGAAGTAGAAAGAAAGAAGCGGG
AGGAGGTGGAAAAGGCTCACCTGCTTGAAGTCCAAGGCCTGCAAGTTCGGATTAGAGATTTGGAGGCTGA
GGTGTTCAGACTACTAAAGCAAAATGGGACCCAGGTTAACAACAACAACAACATCTTTGAGAGAAGACCA
TCTCCCGGGGAAGTCTCGAAAGGAGACACTATGGAGAATGTGGAAGTCAAGCAAACATCCTGTCAGGACG
GCTTGAGCCAAGACCTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCGAAAGCATTGAAAACCCG
GGCCCAGCTCTCTGTGAAGAACAGGCGCCAGAGGCCCACAAGGACACGGCTCTATGACAGCGTCAGCTCA
ACTGATGGGGAGGACAGCCTGGAGAGGAAGAATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCA
GCTCAGCAGACCTGAGTGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTC
CTCGGATGAGAGCCTGGATATGATAGATGACGAGATCCTTGACGATGGACAGTCTCCCAAACACACTCAG
AGTCAGAATCGGGCCGTTCATGAATGGAGTGTGCAGCAGGTGTCCCACTGGTTAATGAGCCTCAGTCTGG
ACCAGTACGTGCCTGAATTCAGTGCCCAGAGCATCAGTGGGGAGCAGCTCCTGCAGCTGGATGGAAATAA
ACTGAAGGCTCTTGGAATGACATCATCCCAGGACCGGGCACTGGTTAAAAAAAAACTGAAGGAAATGAAG
ATGTCTCTCGAGAAGGCTCGCAAGGCCCAGGAGAAAATGGAAAAACAAAGAGAGAAGCTGAGGAGGAAGG
AACAAGAGCAAATGCAGAGGAAGTCTAAGAAGTCGGAAAAGATGACTTCCACAGCCGATCAACCGTGA

Translation (1095 aa):
MLKAESSGERTTLRSASPHRNAYRTEFQALKSTFDKPKSDGEQKTKEGEGSQQSRGRKYGSNVNRIKNLF
MQMGMEPSENAAIIAKTRGKGRPSSPQRRMKPKEFVEKTDGSVVKLESSVSERISRFDTMHDGPSYAKFT
ETRKMFERSVHESGQNHRYSPKKEKGGGTEPQDEWGGSKSNRGSSDSLDSLSPRTEAVSPTVSQLSAVFE
NSEPPGALTSGKAESADYSVTGHYPLNLPSVTVTNLDTFGRLKDSNSKPPSNKQDTDTEDAQKSDAVPVP
EVAQKGTSLASLPSEESQLSTEAEDVTTAQPEALDSTDKDSPEEPSAENQAMPKSHILSPRNEPLEDAEA
NVVGSERAQHQKKDLTGGDLTSPDASASSCGREVPEDSNSFESSHVYMHSDYNVYRVRSRYNSDWGETGT
EQDEEEDSDENNYYQPDMEYSEIVGLPEEEEIPANRKIKFSCAPIKVFNTYSNEDYDRRNDDVDPVAASA
EYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTDGGAAQRDGRIQVNDQIVE
VDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPGQVSEVAQLISQTLEQERRQRELLERHYAQYDADDD
ETGEYATDEEEDEGGPILPSGDVAIEVFELPENEDMFSPSDLDTSKLSHKFKELQIKHAVTEAEIQKLKT
KLQAAENEKVRWELEKNQLQQNIEENKERMLKLESYWIEAQTLCHTVNEHLKETQSQYQALEKKYNKAKK
LIKDFQQKELDFIKRQEVERKKREEVEKAHLLEVQGLQVRIRDLEAEVFRLLKQNGTQVNNNNNIFERRP
SPGEVSKGDTMENVEVKQTSCQDGLSQDLNEAVPETERLDSKALKTRAQLSVKNRRQRPTRTRLYDSVSS
TDGEDSLERKNFTFNDDFSPSSTSSADLSGLGAEPKTPGLSQSLALSSDESLDMIDDEILDDGQSPKHTQ
SQNRAVHEWSVQQVSHWLMSLSLDQYVPEFSAQSISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMK
MSLEKARKAQEKMEKQREKLRRKEQEQMQRKSKKSEKMTSTADQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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