NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19849.1 Public Mus musculus 5 Nptx2 23 108 98 CCDS HistoryNCBI Gene:53324Re-query CCDS DB by CCDS ID:19849.1Re-query CCDS DB by GeneID:53324See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071782.7 ENSMUSP00000071687.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071782.7Link to Ensembl Protein Viewer:ENSMUSP00000071687.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071782Re-query CCDS DB by Protein ID:ENSMUSP00000071687
Original member Current member NCBI NM_016789.3 NP_058069.1 Accepted alive Link to Nucleotide Sequence:NM_016789.3Link to Protein Sequence:NP_058069.1Re-query CCDS DB by Nucleotide ID:NM_016789Re-query CCDS DB by Protein ID:NP_058069Link to BLAST:NP_058069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058069.1 429 O70340 429 100% 0 0

Chromosomal Locations for CCDS 19849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 144546064 144546483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144548119 144548335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144553400 144553644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144555297 144555476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144556167 144556394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGCTGGCGCTGCTGACCGTCGGCGTGGCGCTCGCCGTGGCCGCCGGACGAGCCCAGGACAGCCCGATAC
CTGGCAGCCGCTTCGTGTGCACCGCGTTGCCCCCCGAAGCGGCGCGCGCCGGCTGCCCGCTGCCCGCGAT
GCCCATGCAGGGAGGCGCTCTGAGCCCCGAGGAGGAGCTGCGAGCCGCTGTGCTGCAGCTGCGCGAGACC
GTCGTGCAGCAGAAGGAGACGCTGGGCGCCCAGCGAGAAGCCATCCGAGAGCTCACCGGCAAGCTGGCCC
GCTGCGAGGGGCTGGCGGGCGGCAAGGCGCGCGGCACAGGCAAGGACACCATGGGCGACCTGCCGCGGGA
CCCGGGCCACGTCGTGGAGCAGCTTAGCCGCTCCTTGCAAACCCTCAAGGACCGCTTGGAGAGCCTCGAG
CTCCAGCTCCGCACAAATGTGTCTAACGCTGGGCTGCCGAGCGACTTCCGAGAGGTGCTCCAGCGGAGGC
TCGGGGAGCTGGAGAGGCAGTTGCTACGCAAGGTGGCGGAGCTGGAAGATGAGAAGTCCCTGCTTCATAA
TGAGACCTCGGCTCACCGGCAGAAGACAGAGAGCACGCTGAACGCCCTGCTGCAGAGGGTGACTGAGCTG
GAGCGAGGCAACAGTGCATTCAAGTCACCAGATGCATTCAAAGTGTCCCTTCCTCTCCGTACAAACTACC
TGTATGGCAAGATCAAGAAGACATTGCCTGAGCTGTACGCCTTTACCATCTGCCTGTGGCTGCGGTCCAG
TGCCTCGCCAGGCATCGGTACGCCATTCTCCTACGCTGTGCCCGGGCAAGCCAACGAGATTGTGCTGATA
GAGTGGGGCAATAACCCCATTGAGCTGCTCATCAACGACAAGGTCGCACAGCTGCCGCTGTTTGTCAGTG
ATGGCAAGTGGCACCACATCTGCATCACCTGGACCACTCGAGACGGCATGTGGGAAGCGTTCCAGGATGG
GGAGAAGCTGGGCACTGGGGAAAACCTGGCACCCTGGCACCCCATTAAGCCAGGGGGCGTGCTCATCCTG
GGGCAGGAGCAGGACACGGTGGGAGGCAGATTTGATGCCACGCAGGCCTTTGTTGGAGAGCTCAGCCAGT
TCAACATATGGGACCGCGTCCTCCGGGCGCAGGAGATCATCAACATCGCCAACTGCTCCACGAACATGCC
CGGCAACATCATCCCGTGGGTGGACAACAATGTCGATGTGTTCGGCGGGGCTTCCAAGTGGCCTGTGGAG
ACCTGTGAAGAGCGGCTCCTGGACTTGTAG

Translation (429 aa):
MLALLTVGVALAVAAGRAQDSPIPGSRFVCTALPPEAARAGCPLPAMPMQGGALSPEEELRAAVLQLRET
VVQQKETLGAQREAIRELTGKLARCEGLAGGKARGTGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLE
LQLRTNVSNAGLPSDFREVLQRRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTEL
ERGNSAFKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLI
EWGNNPIELLINDKVAQLPLFVSDGKWHHICITWTTRDGMWEAFQDGEKLGTGENLAPWHPIKPGGVLIL
GQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIINIANCSTNMPGNIIPWVDNNVDVFGGASKWPVE
TCEERLLDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH