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Report for CCDS19847.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19847.1 Public Mus musculus 5 Bhlha15 23 108 98 CCDS HistoryNCBI Gene:17341Re-query CCDS DB by CCDS ID:19847.1Re-query CCDS DB by GeneID:17341See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19847.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060747.7 ENSMUSP00000055493.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060747.7Link to Ensembl Protein Viewer:ENSMUSP00000055493.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060747Re-query CCDS DB by Protein ID:ENSMUSP00000055493
Original member Current member NCBI NM_010800.4 NP_034930.1 Accepted alive Link to Nucleotide Sequence:NM_010800.4Link to Protein Sequence:NP_034930.1Re-query CCDS DB by Nucleotide ID:NM_010800Re-query CCDS DB by Protein ID:NP_034930Link to BLAST:NP_034930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034930.1 197 Q9QYC3 197 100% 0 0

Chromosomal Locations for CCDS 19847.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 144191072 144191665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGAAGACCAAAAACCGGCCCCCTCGGCGCCGAACACCCATGCAGGACACAGAAGCCACCCCAGGAGAGC
AGACACCTGACAGACCCCAGTCAGGCTCAGGGGGGTCAGAGCTGACAAAGGGTCTCCGGAGCAGGACAGC
GCGTGCAAGCGGAGGTCGGGGAGAGGTCAGCCGCCGGCGACAGGGGTCTGGTGGCCGCAGGGAGAACAGT
GTTCAGAGGCGGCTGGAGAGCAATGAGCGAGAGAGGCAGCGGATGCATAAACTCAACAATGCCTTCCAGG
CACTGCGCGAGGTCATCCCGCACGTGCGGGCTGACAAGAAGCTCTCCAAGATCGAGACCCTCACGCTGGC
CAAGAACTATATCAAGTCGCTGACCGCCACCATACTTACTATGTCCAGCAGCCGCCTCCCGGGGCTGGAG
GCACCAGGTCCTGCGCCAGGCCCTAAATTATACCAGCACTACCATCACCAGCAGCAGCAACAGCAGCAGC
AGCAGCAGGTAGCTGGGGCCATGCTTGGTGTCACTGAGGACCAGCCCCAAGGCCACCTGCAACGCTACTC
TACACAGATCCACAGCTTCAGAGAGGGGAGCTAG

Translation (197 aa):
MKTKNRPPRRRTPMQDTEATPGEQTPDRPQSGSGGSELTKGLRSRTARASGGRGEVSRRRQGSGGRRENS
VQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMSSSRLPGLE
APGPAPGPKLYQHYHHQQQQQQQQQQVAGAMLGVTEDQPQGHLQRYSTQIHSFREGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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