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Report for CCDS19801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19801.1 Public Mus musculus 5 Zfp68 23 108 98 CCDS HistoryNCBI Gene:24135Re-query CCDS DB by CCDS ID:19801.1Re-query CCDS DB by GeneID:24135See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19801.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063262.10 ENSMUSP00000069615.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063262.10Link to Ensembl Protein Viewer:ENSMUSP00000069615.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000063262Re-query CCDS DB by Protein ID:ENSMUSP00000069615
Original member Current member EBI ENSMUST00000110905.8 ENSMUSP00000106530.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110905.8Link to Ensembl Protein Viewer:ENSMUSP00000106530.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110905Re-query CCDS DB by Protein ID:ENSMUSP00000106530
Original member Current member NCBI NM_001163797.1 NP_001157269.1 Accepted alive Link to Nucleotide Sequence:NM_001163797.1Link to Protein Sequence:NP_001157269.1Re-query CCDS DB by Nucleotide ID:NM_001163797Re-query CCDS DB by Protein ID:NP_001157269Link to BLAST:NP_001157269.1
Original member Current member NCBI NM_013844.2 NP_038872.1 Accepted alive Link to Nucleotide Sequence:NM_013844.2Link to Protein Sequence:NP_038872.1Re-query CCDS DB by Nucleotide ID:NM_013844Re-query CCDS DB by Protein ID:NP_038872Link to BLAST:NP_038872.1

Chromosomal Locations for CCDS 19801.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138606239 138607821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138611824 138611913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138612039 138612165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138616470 138616490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGTCCTGGAAGCCAGAAATGGGGCTGGTGTCATTTGAGGATATAGCTGTGGAATTCACCTGGCAGGAAT
GGCAGGACCTGAATGAAGGTCAGAGAACTCTCTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGCT
GTTCTTGGGGCACTGCAAAACCAAACCGGAGCTGATCTTCAATTTGGAGCAAAGACTTGGGTCATGGATT
GTAGAAGCCTCACACCAGTGTGTCCCAGATTTCCAGAATATGAGTACCCTGAATAAGAGCAGTCCAGATA
CCAAAGCAAGACACGTGTGGCAAGTTGCCCTCAACAGTGAAACATCAAAGGAGTTGGCTGGAATAGGGAA
TACTTGCAATGTGAGCACAAACCATATTTCAGATCAGACTATCAAGAATGAGAACTCACTAGGAATGAGT
CCTAGAAAGTTTATTCTGTGGAAGGACGTGTATCTCCACACTGATGCTGATGAGATAGAAGTTGGAGAAG
AACCTGAAGATCTTAATGGAACTGCAGAATCTGTCACACACCCCGAGCAAGTTAGTCTATACAGGTTTCA
AAGGTCACAGAGTTACTTTCAAAGTCTGATACCAGGGAAATCCTTCAACACAAAAGCAGTATTACTTACT
CATAAGTTCAGTGAATATGCAAAATCCTTAGGTGATACAGCATTTATTGACAAAGAGATGGCTCAGATAA
GGGTGAAATCCTTTGAATGTAATGTATCAGAGATAAACTGTAGCAAGTCTGACCTTAATGAAAATGAACC
CACGCACATGGGAGAGAAACATTACAAATGTAGTAACTTTGAGAACCCTTTTATTATTGAATCATACCTT
CCAAAACATAAGGGGCAGCATGAGAAGCTCTTTATCCAGAAGGAATATGAGTTTTCTCAGCAGTCAGAAG
TGAGTCTTCATCAGAAAATCCGCAGAGGGAAAAAAACCTATGAATGTAAAATATGTGGCAAGTGCTTTTA
TTGGAAAACCAGCTTCAATAGACATCAGAGCACTCACACTGGTGAGAAGCCCTATGAATGTACAGAATGC
AGTAAAGCGTTCTGCCAGAAGTCACACCTCACTCAGCACCAGAGAGTTCACACAGGCGAGAGACCATACA
TATGCTTTGAATGCAGGAAAGCTTTCTATCGTAAATCAGAGCTTACTGACCATCAGAGAATTCATACAGG
TGAGAAGCCATATGAATGTAAGGAATGTGGGAAAGCTTTTTGCCAAAAGCCCCAACTTACTCTACATCAG
AGAATTCATACAGGTGAGAAGCCCTATGAGTGTGCAGAATGTGGGAAAGCCTTCTCCACTAAGTCCTATT
TAACTGTCCATCAGAGAACTCACACAGGTGAGAAACCTTACGAATGTACAGTATGTAGGAAGTCATTTAT
CTGTAAGTCAAGTTTCAGTCATCATTGGAGAACTCATACAGGTGAGAAACCTTACGAATGTAAGCAGTGT
ATGAAGACCTTCTACCGTAAGTCAGGCCTGACTCGACACCAGAGAACTCACACAGGTGACAAACGCTATG
AATGTCAATTATGTCAGAAAGCTTTTTACTGCACTTCACACCTCATTGTACATCAGCGAACTCATACGGG
TGAGAAACCTTATGAATGTAAGGAATGTAGGAAAGCTTTCTATGATAAGTCAAACCTTAAGCGGCATCAG
AAGATTCATAGTATGAAGAAAGCCTCTGAGAGCAAACAGTCTAACAACTTTTTTCTGAGTGATACTTCTC
AACATCAGACGATGTATTATGAATATGAAGAATGCAAGAAAGCTTTCCACCAGAAAACAAACTTTACTTA
A

Translation (606 aa):
MSWKPEMGLVSFEDIAVEFTWQEWQDLNEGQRTLYRDVMLENYSNLLFLGHCKTKPELIFNLEQRLGSWI
VEASHQCVPDFQNMSTLNKSSPDTKARHVWQVALNSETSKELAGIGNTCNVSTNHISDQTIKNENSLGMS
PRKFILWKDVYLHTDADEIEVGEEPEDLNGTAESVTHPEQVSLYRFQRSQSYFQSLIPGKSFNTKAVLLT
HKFSEYAKSLGDTAFIDKEMAQIRVKSFECNVSEINCSKSDLNENEPTHMGEKHYKCSNFENPFIIESYL
PKHKGQHEKLFIQKEYEFSQQSEVSLHQKIRRGKKTYECKICGKCFYWKTSFNRHQSTHTGEKPYECTEC
SKAFCQKSHLTQHQRVHTGERPYICFECRKAFYRKSELTDHQRIHTGEKPYECKECGKAFCQKPQLTLHQ
RIHTGEKPYECAECGKAFSTKSYLTVHQRTHTGEKPYECTVCRKSFICKSSFSHHWRTHTGEKPYECKQC
MKTFYRKSGLTRHQRTHTGDKRYECQLCQKAFYCTSHLIVHQRTHTGEKPYECKECRKAFYDKSNLKRHQ
KIHSMKKASESKQSNNFFLSDTSQHQTMYYEYEECKKAFHQKTNFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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