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Report for CCDS19775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19775.1 Public Mus musculus 5 Nyap1 23 108 98 CCDS HistoryNCBI Gene:243300Re-query CCDS DB by CCDS ID:19775.1Re-query CCDS DB by GeneID:243300See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061789.13 ENSMUSP00000058217.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061789.13Link to Ensembl Protein Viewer:ENSMUSP00000058217.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061789Re-query CCDS DB by Protein ID:ENSMUSP00000058217
Original member Current member EBI ENSMUST00000118326.7 ENSMUSP00000113397.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118326.7Link to Ensembl Protein Viewer:ENSMUSP00000113397.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118326Re-query CCDS DB by Protein ID:ENSMUSP00000113397
Original member Current member NCBI NM_175521.4 NP_780730.2 Accepted alive Link to Nucleotide Sequence:NM_175521.4Link to Protein Sequence:NP_780730.2Re-query CCDS DB by Nucleotide ID:NM_175521Re-query CCDS DB by Protein ID:NP_780730Link to BLAST:NP_780730.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780730.2 833 Q6PFX7-1 833 100% 0 0

Chromosomal Locations for CCDS 19775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137731682 137731933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137733051 137733160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137733716 137733925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137734840 137736354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137737809 137738155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137739651 137739718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGAACCTTCTCTACCGAAAAACCAAGCTGGAGTGGAGACAGCACAAAGAAGAGGAGGCCAAACGGAGCT
CCAGTAAGGAAGCAGCCCCCACAGGCCCGGTGGGGCCTGGGGCTGTCCCAGGGCCTGGGGTTCGAGTGCG
AGACATTGCCTCGCTTCGACGATCCCTCAGGATGGGTTTCATGACGATGCCCGCGTCCCAGGAACACACC
CCTCACCCCTGCCGCAGCACCATGGCCCCACGCTCTCTCTCCTGCCACTCGGTGGGCAGCATGGACAGTG
TAGGTGGTGGGCCTGGGGGAGGGCTCACGGAGGACAGCAGCACCCGGAGACCCCCAGCTAAGCCCCGGAG
ACACCCCAGCACCAAGCTCAGCATGGCAGGACCAGGGGCAGAGACACCTCCAAGTAAGAAAGCAGGCTCC
CAGAAGCCAGCTCCCGAATGCCGTGAGTCCAGCCGGAAGGTTCCCCCACAGAAACCCAGGCGAAGCCCCA
ATACCCAGCTGTCTGTGTCCTTTGATGAGTCTTGTGCCCCAGCCCCATCTCCTCGAGGGGCGAACCTGCC
CCTGCAACGCCTCAGTAGGGCTTCTCGAATAACTGGAGACCTGGATGCAGGGGCCCAGGAAGAAGAGCCA
GTGTACATTGAGATGGTAGGGGATGTCTTTCGAGGAGGAGGACGAAGTGGAGGAGGCCTGGCGGGACCTC
CTCTTGGAAGTGGAGGCCCAACCCCTCCAGCTGCTGCCGATTCGGACTCTGAAGACAGTGAGGCTATCTA
TGAAGAGATGAAGTACCCCTTGCCTGAAGAAGCAGGAGATGGCAGGGCCAACGGGCCTCCTCCATTGACG
GCACCCTCCCCTCCACAACAGACCCATATCCTCCAGCCTCACCCCCACCCCCATCGCCGTCCAGCTTCAG
CCCTCCCAAGCCGGAGGGATGGGACACCCACCAAGACCACACCTTGTGAAATACCGCCACCCTTTCCTAA
CCTCCTTCAGCACCGGCCTCCACTTCTGGCCTTCCCTCAAGCCAAGTCTGCTTCACGAGCCCCTGGTGAT
GGGGTCTCAAGGCTACCGGTCCTCTGCCACTCCAAGGAGCCAGCTGGTTCCACCCCAGCTCCCCAAGTGC
CTGCACGAGAGCGGGAGACGCCTCCCCTACCACCTCCGCCTCCTGCTGCCAACCTGCTATTGCTGGGACC
ATCAGGCCGAGCCCGGAGCCACTCGACACCGTTGCCACCCCAGGGCTCTGGCCAGACCAGGGGAGAGCGG
GAACTCCCGAACTCTCACAGCATGATCTGCCCCAAGGCGGCAGGGGTACCCGCAGCCCACCCTGCCCCAG
CTGCCTTGCTCCCCGGCCCTCCCAAGGACAAGGCCGTGTCGTACACTATGGTGTATTCTGCGGTAAAAGT
GACCACACACTCGGTCCTGCCAGCTGGTCCACCCCTGGGTGTTGGAGAGCCAAAGACAGAGGAGATTTCA
GTACTTCATGGAATGCTGTGTGCCAGTTCGAGGCCCCCTGTCCCAGGGAAATCCAGCCCCCATAGCGGGG
CTATGGGTTCAGCAGCTGGGGTCCTCCACCACCGCAGCTGCCTGGCCTCCCCCCACAGCCTTCCGGATCC
AACTGGAGGTTCCCTGACTCCCCTCTGGACCTACCCAGCCACAGCAGCTGGGCTCAAGAGACCCCCTGCC
TATGACAGCCTCAAGGCTGGGGGGGTGTTGAATAAGGGCTGTGGAATGGGGGCACCATCCCCCATGGTCA
AGATCCAGCTGCAAGAGCAAGGGACTGATGGGGGTGCCTTTGCCAGCATCTCCTGTGCCCATGTCATTGC
CAGTGCGGGGACGCCAGAAGAGGAAGAAGAGATGGGGGCCGCGTTTGGGGCAGGCTGGGCTCTGCAGAGG
AAGGTCCTGTATGGAGGACGGAAGGCAAAGGAAGTGGACACAGAAGAGGACGGTGCCCGAGCCTGGAATG
GCAGTACAGAAGGTCCAGGCAAAGTCGAACATGAGGACAGGGGCCCTGTGCCATCAGGGATTCCTGTGAG
GAGCCAGGGGGCAGAGGGTCTGCTGGCCAGGATCCACCATGATCGAGGAGGGAGCCGCACAGCGCTGCCT
GTCCCTTGCCAGACTTTCCCTGCCTGCCACCGGAATGGAGATTTCACGGGAGGGTACCGCCTGGGCCGTT
CTGCGTCCACCTCTGGAGTCCGTCAGGCTGCACTCCATACCCCACGGCCCTGCAGCCAGCCCAGGGATGC
CCTGAGCCAGACACACCCTGTGCTGCCCCTGCCCCTGCCGCCCCAGCCGGCTCGGGAGCGCGATGGCAAA
CTCCTAGAGGTGATCGAGCGCAAACGCTGCGTGTGCAAGGAGATCAAGGCACGCCACCGTCCCGACCGGG
GGCTCTGCAAGCAAGAGAGCATGCCCATCCTCCCCAGCTGGCGGCGGGTCCCTGAACCCCGCAAGTCTGG
TACCCCGCCCTGCCGGCGGCAGCACACGGTCCTCTGGGACACTGCCATCTGA

Translation (833 aa):
MNLLYRKTKLEWRQHKEEEAKRSSSKEAAPTGPVGPGAVPGPGVRVRDIASLRRSLRMGFMTMPASQEHT
PHPCRSTMAPRSLSCHSVGSMDSVGGGPGGGLTEDSSTRRPPAKPRRHPSTKLSMAGPGAETPPSKKAGS
QKPAPECRESSRKVPPQKPRRSPNTQLSVSFDESCAPAPSPRGANLPLQRLSRASRITGDLDAGAQEEEP
VYIEMVGDVFRGGGRSGGGLAGPPLGSGGPTPPAAADSDSEDSEAIYEEMKYPLPEEAGDGRANGPPPLT
APSPPQQTHILQPHPHPHRRPASALPSRRDGTPTKTTPCEIPPPFPNLLQHRPPLLAFPQAKSASRAPGD
GVSRLPVLCHSKEPAGSTPAPQVPARERETPPLPPPPPAANLLLLGPSGRARSHSTPLPPQGSGQTRGER
ELPNSHSMICPKAAGVPAAHPAPAALLPGPPKDKAVSYTMVYSAVKVTTHSVLPAGPPLGVGEPKTEEIS
VLHGMLCASSRPPVPGKSSPHSGAMGSAAGVLHHRSCLASPHSLPDPTGGSLTPLWTYPATAAGLKRPPA
YDSLKAGGVLNKGCGMGAPSPMVKIQLQEQGTDGGAFASISCAHVIASAGTPEEEEEMGAAFGAGWALQR
KVLYGGRKAKEVDTEEDGARAWNGSTEGPGKVEHEDRGPVPSGIPVRSQGAEGLLARIHHDRGGSRTALP
VPCQTFPACHRNGDFTGGYRLGRSASTSGVRQAALHTPRPCSQPRDALSQTHPVLPLPLPPQPARERDGK
LLEVIERKRCVCKEIKARHRPDRGLCKQESMPILPSWRRVPEPRKSGTPPCRRQHTVLWDTAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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