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Report for CCDS19745.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19745.2 Public Mus musculus 5 Styxl1 23 108 98 CCDS HistoryNCBI Gene:76571Re-query CCDS DB by CCDS ID:19745.2Re-query CCDS DB by GeneID:76571See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 19745.1
The coding region has been updated to represent an alternate splice pattern and to extend the N-terminus by 144 aa to one that is more supported by available conservation data and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19745.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053906.10 ENSMUSP00000051216.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053906.10Link to Ensembl Protein Viewer:ENSMUSP00000051216.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053906Re-query CCDS DB by Protein ID:ENSMUSP00000051216
Original member Current member EBI ENSMUST00000111163.8 ENSMUSP00000106793.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111163.8Link to Ensembl Protein Viewer:ENSMUSP00000106793.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111163Re-query CCDS DB by Protein ID:ENSMUSP00000106793
Original member Current member EBI ENSMUST00000111164.8 ENSMUSP00000106794.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111164.8Link to Ensembl Protein Viewer:ENSMUSP00000106794.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111164Re-query CCDS DB by Protein ID:ENSMUSP00000106794
Original member Current member EBI ENSMUST00000177559.7 ENSMUSP00000135982.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177559.7Link to Ensembl Protein Viewer:ENSMUSP00000135982.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177559Re-query CCDS DB by Protein ID:ENSMUSP00000135982
Original member Current member NCBI NM_001289554.1 NP_001276483.1 Accepted alive Link to Nucleotide Sequence:NM_001289554.1Link to Protein Sequence:NP_001276483.1Re-query CCDS DB by Nucleotide ID:NM_001289554Re-query CCDS DB by Protein ID:NP_001276483Link to BLAST:NP_001276483.1
Original member Current member NCBI NM_001289555.1 NP_001276484.1 Accepted alive Link to Nucleotide Sequence:NM_001289555.1Link to Protein Sequence:NP_001276484.1Re-query CCDS DB by Nucleotide ID:NM_001289555Re-query CCDS DB by Protein ID:NP_001276484Link to BLAST:NP_001276484.1
Original member Current member NCBI NM_029659.4 NP_083935.3 Accepted alive Link to Nucleotide Sequence:NM_029659.4Link to Protein Sequence:NP_083935.3Re-query CCDS DB by Nucleotide ID:NM_029659Re-query CCDS DB by Protein ID:NP_083935Link to BLAST:NP_083935.3

Chromosomal Locations for CCDS 19745.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135747767 135747898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135753832 135753944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135755407 135755504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135756999 135757144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135759129 135759274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135765651 135765816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135768854 135768915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135770256 135770358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGCTGACCTGCTTTTCTGCGAGCCAACAGAACTCTATAACATCTTGAATCAGGTCTCCAAGCTGTCCA
GATTGGCTGAGCCCAACTACCTCTGTTTACTGGATGTCCGATCAAAACGACAGTATGACGAGAGCCATGT
GATCACTGCCCTCAGAGTGAAGAAGCGAGATCATCAGTACCTCATCCCGGAGTCCGTAGACCTGGAGTGT
GTGAGATACTGCATCGTGTACGACAGCAACACCAGTTCCCTGGAGCTGTGCATACGGCGGCAGCTGGAGG
AGGAGGAAGAGGAGGAGGAGGTAGAAAGAGAGGACAAGGAGGAGGACACTGAACTCCTACCTGGACCTGC
TGTGGAATTTGGACAAATCCTCATTCACTTTACCCGCCAACCTGTCTATGTCCTCAGAGGGGGCTATGAA
TGCTTCTCTGGCATGTACCACTTCTTCCGGACTCAGAAGATCATCTGGATGCCCCAGGAACTGGATGCCT
TCCAGCCATACCCAGTTGAGATACTTCCAGGCAGAGTCTACCTGGGCAAAATCAGTCAAGCCTGCAATGC
TAAGATGCACAAGGACTTGAAAATTAAAGCACATGTCAATATTTCCATGGAGACAACACCCTATTTTATA
GGCAATGCAGACAAGCTCTTACATATCAAGCTTGAGGATTCTCCAGACACCTTGCTTTTTGACTATTTCC
GCCACATCTGTCACTTTATAGAACTTCACCTCAGGCTCCACTCTGTCGTTCTGGTCTTTTCCACCCGGGG
CATCAGCCGCAGCGTTGCTGCTGTGGTGGCCTTACTCATGCATTATAATGAGGAGACGCTGAAGAGGTCC
TGGGCCCAAGTGAAGAAATGCAAAACCAACATGCGTCCGAATCGGGCCTTCGTGGCTCAGCTGCTGGAGT
GGGAGAAAGTCCTCCATGGGGAATATCTCACAGACATCTCCGAGCCTATCTACTGA

Translation (321 aa):
MADLLFCEPTELYNILNQVSKLSRLAEPNYLCLLDVRSKRQYDESHVITALRVKKRDHQYLIPESVDLEC
VRYCIVYDSNTSSLELCIRRQLEEEEEEEEVEREDKEEDTELLPGPAVEFGQILIHFTRQPVYVLRGGYE
CFSGMYHFFRTQKIIWMPQELDAFQPYPVEILPGRVYLGKISQACNAKMHKDLKIKAHVNISMETTPYFI
GNADKLLHIKLEDSPDTLLFDYFRHICHFIELHLRLHSVVLVFSTRGISRSVAAVVALLMHYNEETLKRS
WAQVKKCKTNMRPNRAFVAQLLEWEKVLHGEYLTDISEPIY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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