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Report for CCDS19730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19730.1 Public Mus musculus 5 Abhd11 23 108 98 CCDS HistoryNCBI Gene:68758Re-query CCDS DB by CCDS ID:19730.1Re-query CCDS DB by GeneID:68758See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19730.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046999.11 ENSMUSP00000043041.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046999.11Link to Ensembl Protein Viewer:ENSMUSP00000043041.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046999Re-query CCDS DB by Protein ID:ENSMUSP00000043041
Original member Current member NCBI NM_145215.2 NP_660250.1 Accepted alive Link to Nucleotide Sequence:NM_145215.2Link to Protein Sequence:NP_660250.1Re-query CCDS DB by Nucleotide ID:NM_145215Re-query CCDS DB by Protein ID:NP_660250Link to BLAST:NP_660250.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660250.1 307 Q8K4F5 307 100% 0 0

Chromosomal Locations for CCDS 19730.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135009712 135009839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135009982 135010117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135010887 135011060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135011210 135011380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135011484 135011665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135011887 135012019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGCTCCGCTGGGCGCGAGCGTGGAGGGTCCCCCGTGGGGTACTCGGTGCCTCCTCTCCCAGGCGTTTGG
CGGTTCCTGTCACGTTCTGTAGCAGCCGCAGTAGTGGCCAAGAAAACGCCGATCTGAGGCCGCTGCCGCT
GTCTTATAATCTTCTAGATGGAGACGCGACACTCCCAGCCATCGTCTTTTTGCATGGGCTCTTCGGCAGC
AAAACCAACTTCAACTCCCTCGCCAAGGCAATGGTTCAGAGGACTGGCCGGAGGGTGCTGACGGTGGATG
CCCGGAACCACGGTGACAGCCCCCACAGTCCAGACGCAAGCTATGAGGCCATGAGTCAGGACCTTCAGGG
CCTCCTTCCACAGCTGGGTCTGGTGCCCTGCGTCCTCGTTGGCCACAGCATGGGAGGAAAGACAGCCATG
CTCCTGGCACTGCAGAGGCCAGATGTTGTGGAACGATTGGTTGTTGTAGACATAAGCCCGGTAGGAACCA
CACCTGGATCACACATTGGAGCCTTCATAGCAGCCATGAAGGCTGTTGAGATCCCAGAGAAGGTGCCGCA
CTCCCAAGCCCGAAAACTGGCGGATAAGCAGCTTAGTTCGGTTGTCAAGGAAGCGGGCATTCGGCAGTTC
CTGCTCACTAACCTGGTAGAGGTGGGTGGGCGATTCTCCTGGAGACTGAACTTGGATACGTTAGCTCAGC
ACTTGGACAAGATAATGACCTTTCCTCAGCAACGTGAACCCTACTCGGGGCCAACTCTCTTCCTGCTTGG
TGGAAATTCTACATATGTACAACCCAGCCACCACTCAGAGATTAGGCGACTCTTCCCTCAAGCCCAGATT
CAGACCGTGCCTAACGCTGGCCACTGGGTCCACAGCGACAAACCCCAAGACTTCATGGATGCTGTCACCA
GCTTCTTGGCTTAA

Translation (307 aa):
MLRWARAWRVPRGVLGASSPRRLAVPVTFCSSRSSGQENADLRPLPLSYNLLDGDATLPAIVFLHGLFGS
KTNFNSLAKAMVQRTGRRVLTVDARNHGDSPHSPDASYEAMSQDLQGLLPQLGLVPCVLVGHSMGGKTAM
LLALQRPDVVERLVVVDISPVGTTPGSHIGAFIAAMKAVEIPEKVPHSQARKLADKQLSSVVKEAGIRQF
LLTNLVEVGGRFSWRLNLDTLAQHLDKIMTFPQQREPYSGPTLFLLGGNSTYVQPSHHSEIRRLFPQAQI
QTVPNAGHWVHSDKPQDFMDAVTSFLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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