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Report for CCDS19665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19665.1 Public Mus musculus 5 B3gnt4 23 108 98 CCDS HistoryNCBI Gene:231727Re-query CCDS DB by CCDS ID:19665.1Re-query CCDS DB by GeneID:231727See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031384.5 ENSMUSP00000031384.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031384.5Link to Ensembl Protein Viewer:ENSMUSP00000031384.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031384Re-query CCDS DB by Protein ID:ENSMUSP00000031384
Original member Current member NCBI NM_198611.2 NP_941013.2 Accepted alive Link to Nucleotide Sequence:NM_198611.2Link to Protein Sequence:NP_941013.2Re-query CCDS DB by Nucleotide ID:NM_198611Re-query CCDS DB by Protein ID:NP_941013Link to BLAST:NP_941013.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941013.2 350 Q1RLK6 350 100% 0 0

Chromosomal Locations for CCDS 19665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123510574 123511626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGTTGCCCAGGTTGGGCTGTGTGCTGTTCTGCAGTCTTGTGGTACTACTGCTCAGCTGCCTGCTCCTTC
TGAAGGAGCGCATACCAGCAGGCAGCTCCAAGGCCCACCAGCAGTTCTTGGCACTGCCAAGGTCCCACCA
TAGCCAGTGCTCACCCAACCTAACAGTTGTTAACACCTCCCTGTCCCTGCCCAGCCGTCATCGCCTCTTC
TTAACCTATCGACACTGCCGAAACTTCTCCATCTTGCTGGAGCCTTCGGAGTGTGCCAGGGACACCTTCC
TGCTCCTGGTCATCAAGTCACAGCCTGCTCATATTGAACAGCGTTCAGCCATTCGAAGCACTTGGGGCCG
GGCTGGGAGCTGGGCTAGGGGTCGGCAGCTGAAGCTGGTGTTCCTCCTGGGGGTGGCAGGACCTGTGCCC
CCGGCCCAGCTGTTGGTCTATGAGAGCTGGCAGTTTGATGACATCTTACAGTGGGACTTTGCTGAGGACT
TCTTTAACCTGACTCTCAAGGAGCTGCACGTGCAGCGCTGGATCGCAGCTGCCTGCACACAGGCCCACTT
CATACTAAAGGGAGACGATGACGTCTTTATCCATGTTCCCAATGTGCTCGAGTTCTTGGAGGGCTGGGAT
CCGGCCCAGGACTTCCTAGTGGGAGATGTCATTCGCTTGGCCCGGCCCAACAGGAACACCAAAGTTAAAT
ATTTCATCCCGTTTTCCATGTACAGGGCCCGCCACTACCCACCTTATGCAGGAGGCGGCGGCTACGTCAT
GTCCCAGGCTACTGTGAGGCATCTTCACATGGCCATGGAGGAGGCAGAGCTCTTTCCTATTGACGATGTC
TTTGTGGGGATGTGCCTGAGGAAGCTGGGGGTGACTCCCATACACCATGCTGGCTTCAAGACATTTGGAA
TCCAACAGCCCCTCAATCCCAGGGACCCTTGTCTGTACAAAGGGCTCCTGCTGGTGCACCGTCTCAGCCC
CCTGGAGATGTGGACCATGTGGGCGCTGGTGACAGATGAGAGGCTTAAGTGTGCAGCTACCCACAAGCCC
TAG

Translation (350 aa):
MLPRLGCVLFCSLVVLLLSCLLLLKERIPAGSSKAHQQFLALPRSHHSQCSPNLTVVNTSLSLPSRHRLF
LTYRHCRNFSILLEPSECARDTFLLLVIKSQPAHIEQRSAIRSTWGRAGSWARGRQLKLVFLLGVAGPVP
PAQLLVYESWQFDDILQWDFAEDFFNLTLKELHVQRWIAAACTQAHFILKGDDDVFIHVPNVLEFLEGWD
PAQDFLVGDVIRLARPNRNTKVKYFIPFSMYRARHYPPYAGGGGYVMSQATVRHLHMAMEEAELFPIDDV
FVGMCLRKLGVTPIHHAGFKTFGIQQPLNPRDPCLYKGLLLVHRLSPLEMWTMWALVTDERLKCAATHKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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