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Report for CCDS19572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19572.1 Public Mus musculus 5 Ankrd13a 23 108 98 CCDS HistoryNCBI Gene:68420Re-query CCDS DB by CCDS ID:19572.1Re-query CCDS DB by GeneID:68420See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102578.10 ENSMUSP00000099638.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102578.10Link to Ensembl Protein Viewer:ENSMUSP00000099638.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102578Re-query CCDS DB by Protein ID:ENSMUSP00000099638
Original member Current member NCBI NM_026718.2 NP_080994.2 Accepted alive Link to Nucleotide Sequence:NM_026718.2Link to Protein Sequence:NP_080994.2Re-query CCDS DB by Nucleotide ID:NM_026718Re-query CCDS DB by Protein ID:NP_080994Link to BLAST:NP_080994.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080994.2 588 Q80UP5 588 100% 0 0

Chromosomal Locations for CCDS 19572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114775229 114775324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114785941 114786073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114786685 114786809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114789308 114789353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114791264 114791407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114792100 114792289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114795681 114795747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114796834 114796915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114797853 114797914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114798521 114798651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114799384 114799541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114800705 114800812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114801656 114801816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114803557 114803624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114804229 114804424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGTCCTCGGCCCGCGACACCAGCAGCCGCTTCCCGCTGCACCTCCTGGTCTGGAACAACGACTACGAGC
AGCTGGAGAAGGAGCTGCGGGACCAGAATGCAGAGGCCTTGGACCCCCGGGGTCGGACATTACTGCACCT
TGCAGTTTCTCTGGGGCATCTGGAATCTGCTCGAGTCTTGCTGCGCCATAAAGCAGATGTGACCAAAGAG
AACGGCCAGGGATGGACAGTCTTACACGAAGCTGTGAGCACGGGCGATCCCGAGATGGTGTACACCGTCC
TGCAGCACCGAGACTACCACAACACGTCCATGGCCCTGGAAGGTGTACCCGAGCTGCTACACAAAATCCT
CGAGGCCCCGGATTTCTATGTGCAGATGAAGTGGGAGTTCACCAGCTGGGTGCCCTTGGTGTCTAGAATA
TGCCCCAACGATGTCTGTCGCATATGGAAGAGTGGAGCCAAGCTGCGCGTGGACATCACCTTGCTGGGGT
TTGAAAACATGAGCTGGATCAGAGGGAGGCGGAGCTTCATATTTAAGGGAGGAGACAACTGGGCGGAGCT
GATGGAGGTCAACCACGATGACCGCGTGGTCACCACCGAACACTTCGATCTTTCCCAAGAAATGGAGCGC
CTCACCCTGGACCTGATGAAGCCAAAAAGCAGGGAGGTGGAGAGGCGGCTGACAAGCCCAGTCATCAACA
CCAGCCTGGATACTAAGAACGTTGCCTTTGAGAGAACTAAATCCGGATTCTGGGGCTGGAGGACAGATAA
AGCTGAAGTTGTCAATGGTTACGAAGCCAAGGTTTACTCGGTAAACAACGTGAGCGTGATAACCAGGATC
CGCACCGAGCACCTAACGGAGGAGGAGAAGAAGCGATACAAAGAGGACCGGAATCCACTGGAGTCTCTGC
TCGGAACCGTGGAACATCAGTTTGGTGCTCAAGGGGACCTCGCTACGGAGTGTGCCACTGTGAACAACCC
CACGGCCATCACTCCCGACGAGTACTTTGACGAAGACTTTGACCTGAAAGACAGGGACATTGGAAGACCA
AAAGAGCTGACAATTAGAACGCAGAAGTTTAAGGCTACGCTGTGGATGTGCGAGGAGTTCCCACTCTCCC
TCGTGGAGCAGGTCATCCCCATCATTGACCTCATGGCTCGCACCAGCGCTCACTTTGCCAGATTGAGAGA
TTTCATCAAATTGGACTTCCCTCCTGGATTCCCTGTCAAAATAGAAATCCCCTTATTCCACGTCTTAAAC
GCACGGATCACATTCGGAAATGTCAATGGCTGTAGCACTGCTGATGAGAGCCAGGGTGTGGAGGGGACCC
CGGCCGAGGCAGTTTCCGAGGCCACAAACTTCGAGGTTGATCAGTCTGTCTTTGAAATCCCTGAATCCTA
CCACATTCAAGACAATGGCAGAAACGTGCACCTGCAAGACGAAGACTATGAGATCATGCAGTTTGCCATC
CAGCAGAGCCTGCTGGAGTCCAGTAGGAGCCAGGACCTTTCAGGACCAGCTTCCAACGGAGGGGTCAGCC
ACACACACAGCTATGAAGCCCAGTATGAGAGGGCCATCCAGGAGAGTCTCCTAACCAACATGGAGGGCAG
GTGCCCAGGTGGCCTCAGCGAGTCGAGCCGATTCGATAGCGACCTGCAGCTGGCCATGGAGCTGTCTGCC
AAAGAGCTGGCGGAGCGGGAGCTCAGGCTCCAGGAGGAAGAAGCGGAGCTCCAGCAAGTCTTACAGCTGT
CTCTCACTGAGAAATAG

Translation (588 aa):
MSSARDTSSRFPLHLLVWNNDYEQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKE
NGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRI
CPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSFIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMER
LTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITRI
RTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGDLATECATVNNPTAITPDEYFDEDFDLKDRDIGRP
KELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLN
ARITFGNVNGCSTADESQGVEGTPAEAVSEATNFEVDQSVFEIPESYHIQDNGRNVHLQDEDYEIMQFAI
QQSLLESSRSQDLSGPASNGGVSHTHSYEAQYERAIQESLLTNMEGRCPGGLSESSRFDSDLQLAMELSA
KELAERELRLQEEEAELQQVLQLSLTEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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