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Report for CCDS19563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19563.1 Public Mus musculus 5 Kctd10 23 108 98 CCDS HistoryNCBI Gene:330171Re-query CCDS DB by CCDS ID:19563.1Re-query CCDS DB by GeneID:330171See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102581.10 ENSMUSP00000099641.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102581.10Link to Ensembl Protein Viewer:ENSMUSP00000099641.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102581Re-query CCDS DB by Protein ID:ENSMUSP00000099641
Original member Current member NCBI NM_026145.4 NP_080421.2 Accepted alive Link to Nucleotide Sequence:NM_026145.4Link to Protein Sequence:NP_080421.2Re-query CCDS DB by Nucleotide ID:NM_026145Re-query CCDS DB by Protein ID:NP_080421Link to BLAST:NP_080421.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080421.2 315 Q922M3 315 100% 0 0

Chromosomal Locations for CCDS 19563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114365642 114365866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114367209 114367404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114368342 114368394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114368941 114369027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114370059 114370228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114374896 114375109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114380426 114380428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGAAGAGATGTCAGGAGACAGCGTGGTGAGCTCAGCGGTGCCAGCGGCTGCCACCCGCACTACTTCCT
TCAAGGGTGCCAGCCCCAGCTCCAAGTACGTGAAGCTGAACGTGGGGGGCGCTCTCTACTACACCACCAT
GCAGACGCTCACCAAGCAGGACACCATGCTGAAGGCCATGTTCAGTGGACGCATGGAAGTGCTCACGGAC
AGCGAAGGCTGGATCCTCATTGACCGCTGTGGGAAGCACTTTGGGACAATCCTCAACTACCTGCGAGACG
GGGGTGTACCCTTGCCTGAGAGCCGCCGGGAGATCGAGGAGCTGCTAGCCGAGGCCAAGTACTACCTGGT
GCAGGGCCTGCTGGAAGAGTGCCAGGCCGCCCTACAAAACAAAGATACTTACGAGCCCTTCTGCAAGGTA
CCCGTCATCACATCCTCCAAGGAAGAACAGAGGCTTATAGCGACGTCAAATAAGCCCGCCGTGAAGCTGC
TCTACAACAGGAGCAACAACAAGTACTCCTACACCAGCAATTCTGACGATAACATGTTGAAAAACATCGA
ACTGTTCGATAAGCTGTCCCTGCGCTTCAACGGGCGGGTCCTGTTCATTAAGGACGTCATCGGGGACGAG
ATCTGCTGTTGGTCATTTTACGGCCAGGGCCGGAAAATCGCTGAAGTCTGTTGTACCTCCATCGTCTACG
CCACTGAGAAGAAGCAGACCAAGGTTGAGTTCCCTGAAGCCCGCATTTATGAGGAGACCCTGAATATCTT
GCTGTACGAGGCCCAGGATGGCCGAGGACCTGACAATGCCCTCCTGGAGGCCACGGGCGGGGCAGCTGGA
CGTTCTCATCACCTGGACGAGGACGAGGAGCGGGAGCGGGAGCGGATCGAGCGCGTGAGGAGGATCCATA
TCAAGCGCCCAGATGACCGGGCCCACCTCCACCAGTGA

Translation (315 aa):
MEEMSGDSVVSSAVPAAATRTTSFKGASPSSKYVKLNVGGALYYTTMQTLTKQDTMLKAMFSGRMEVLTD
SEGWILIDRCGKHFGTILNYLRDGGVPLPESRREIEELLAEAKYYLVQGLLEECQAALQNKDTYEPFCKV
PVITSSKEEQRLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFIKDVIGDE
ICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQDGRGPDNALLEATGGAAG
RSHHLDEDEERERERIERVRRIHIKRPDDRAHLHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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