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Report for CCDS19505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19505.1 Public Mus musculus 5 Glmn 23 108 98 CCDS HistoryNCBI Gene:170823Re-query CCDS DB by CCDS ID:19505.1Re-query CCDS DB by GeneID:170823See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078021.12 ENSMUSP00000077168.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078021.12Link to Ensembl Protein Viewer:ENSMUSP00000077168.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078021Re-query CCDS DB by Protein ID:ENSMUSP00000077168
Original member Current member EBI ENSMUST00000082121.8 ENSMUSP00000080766.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082121.8Link to Ensembl Protein Viewer:ENSMUSP00000080766.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000082121Re-query CCDS DB by Protein ID:ENSMUSP00000080766
Original member Current member NCBI NM_001161738.1 NP_001155210.1 Accepted alive Link to Nucleotide Sequence:NM_001161738.1Link to Protein Sequence:NP_001155210.1Re-query CCDS DB by Nucleotide ID:NM_001161738Re-query CCDS DB by Protein ID:NP_001155210Link to BLAST:NP_001155210.1
Original member Current member NCBI NM_133248.2 NP_573511.2 Accepted alive Link to Nucleotide Sequence:NM_133248.2Link to Protein Sequence:NP_573511.2Re-query CCDS DB by Nucleotide ID:NM_133248Re-query CCDS DB by Protein ID:NP_573511Link to BLAST:NP_573511.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155210.1 596 Q8BZM1 596 100% 0 0
NP_573511.2 596 Q8BZM1 596 100% 0 0

Chromosomal Locations for CCDS 19505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 107549059 107549175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107549391 107549473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107550972 107551095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107557282 107557345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107557918 107558024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107558462 107558546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107560876 107560949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107561053 107561094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107561842 107561931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107562245 107562275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107562751 107562804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107570130 107570317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107572280 107572382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107573685 107573922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107575232 107575340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107578451 107578567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107593753 107593878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107596788 107596826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGCTGTGGAGGAACTTCAGAGCATAATAAAAAGATGTCAAATCCTAGAAGAGCATGATTTTAAAGAAG
AAGATTTTGGCCTCTTTCAGTTAGCAGGTCAAAGATGCATTGAAGATGGTTATATAAACCAGCTGCTAGA
GATTATTCAAGATGAAAAGAACAAGACCATCATTAAGTCTATGGGGTGGAATCTTGTTGGTCCAGTTGTT
CGATGCCTCCTGAGGGGCAGAGAAGAGGATAAAAGAGAAGAGTGTTTTCTGATATTTGATTTGCTGGTGA
AGTTATGTAATCCAAAGGAATTGTTGTTGGGTTTGCTTGAACTCATTGAAGAGCCCTCCGGAAAACAGAT
TTCCCAAATTATTCTTCTTTTACTGCAACCATTACAAACAGTTATTCAGAAACTTCCTAACAACAAGGCA
TACTCCGTTGGACTAGCATTGTCAACACTTTGGAGTCAGCTGTCTCTTCTTCCTGTTCCACACTCAGAAG
AACAAATTCAGGCAGATGATTATGGCCTCTGTCAGTGTTGTAAGGCCTTGATAGAGTTCACGAAACCTTT
TGTGGAAGAAGTAATAAGTGATAAAGAAAACAAAGAAAATGCAAAACTAAAAGATGAATTACTGAAATTT
TGTTTCAAAGGCTTGAAATGCCCTTTGCTGACAGCACAATTCCTCGAACAGTCAGAAGACGTTGGAAATG
ACCCTTTTCGGTGTTTTGCATCTGAAATAATAGGATTTTTATCAAAAATTGGACACCCTGTCCCCCAAAT
TATTCTTAATCATGGAAGGAAAAAAAGGACTTGGGATTACCTTGAATTTGAAGAAGAAGAAGACAAACAA
CTGGCAGAGTCTGTGGCTTCTCTGACATATCTAGTATTTGTTCAGGGCATCGGTATTGATCAGCTGCCCA
TGGTCTTAAGCCCATCGTACCTTCTGCAGTTGAACATGGAGCATATTGAAGTGTTTCTGCAAAGAACAGA
ACAGTCTATTTACTCCAAAGGATTGGAACTTCTGGAGACTAGCTTATTGAGATTAGAAGACAACAGCCTA
TGTTATCAGTACTTAGAAATCAAGAGTTTTCTTGCTGTGCCTCAGGGCTTAGTCAAAGTTATGACACTTT
GCCCCATTGAGACATTGAGGAAAAAAGGTTTATCTATGCTTCAGCTGTTTATTGACAAGTTGGATTCACA
AGGCAAATATACATTATTTAGGTGCTTACTAAATACAAGTAATCACTCAGGAGTGGAAGCCTTTGTAATT
CAAAACATCAAAAATCAGATTGATTTATCATTTAAGAAAACATATAACAAATGGTTTGCAGGAGCACAGC
TGATCTCTCTGTTAGACCTGGTCCTGTCTCTCCCTGAGGGCGCTGAGACAGACTTACTGCAGAACTCAGA
CAGGATTATGGCTTCATTAAATTTATTGAGGTATTTGGTTATCAAAGATAATGAAGATGACAATCAAACT
GGATTATGGACAGAACTTGGAAAAATTGAAAATAACTTTCTAAAGCCACTTCATATAGGACTTAATATGT
CAAAAGCACATTATGAAGCAGAAATTAAAAACAGCCAACAAAATAACCAAGTAGCCTCAATGTGTAAAGG
TGTTTGTTCCGTGACTGTAGGTGGAGAAGAAATCCCTTCTATGCCTCCTGAAATGCAGCTTAAGGTCTTA
CATTCCGCTCTCTTCACATTTGACTTGATTGAAAGTGTTCTGGCTCGAGTAGAAGAACTCATTGAAATCA
AATCAAAGTCTACCTCTGAAGAAAATGTTGGGATAAAGTAA

Translation (596 aa):
MAVEELQSIIKRCQILEEHDFKEEDFGLFQLAGQRCIEDGYINQLLEIIQDEKNKTIIKSMGWNLVGPVV
RCLLRGREEDKREECFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQIILLLLQPLQTVIQKLPNNKA
YSVGLALSTLWSQLSLLPVPHSEEQIQADDYGLCQCCKALIEFTKPFVEEVISDKENKENAKLKDELLKF
CFKGLKCPLLTAQFLEQSEDVGNDPFRCFASEIIGFLSKIGHPVPQIILNHGRKKRTWDYLEFEEEEDKQ
LAESVASLTYLVFVQGIGIDQLPMVLSPSYLLQLNMEHIEVFLQRTEQSIYSKGLELLETSLLRLEDNSL
CYQYLEIKSFLAVPQGLVKVMTLCPIETLRKKGLSMLQLFIDKLDSQGKYTLFRCLLNTSNHSGVEAFVI
QNIKNQIDLSFKKTYNKWFAGAQLISLLDLVLSLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEDDNQT
GLWTELGKIENNFLKPLHIGLNMSKAHYEAEIKNSQQNNQVASMCKGVCSVTVGGEEIPSMPPEMQLKVL
HSALFTFDLIESVLARVEELIEIKSKSTSEENVGIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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