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Report for CCDS19479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19479.1 Public Mus musculus 5 Klhl8 23 108 98 CCDS HistoryNCBI Gene:246293Re-query CCDS DB by CCDS ID:19479.1Re-query CCDS DB by GeneID:246293See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031254.8 ENSMUSP00000031254.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031254.8Link to Ensembl Protein Viewer:ENSMUSP00000031254.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000031254Re-query CCDS DB by Protein ID:ENSMUSP00000031254
Original member Current member NCBI NM_001359986.1 NP_001346915.1 Accepted alive Link to Nucleotide Sequence:NM_001359986.1Link to Protein Sequence:NP_001346915.1Re-query CCDS DB by Nucleotide ID:NM_001359986Re-query CCDS DB by Protein ID:NP_001346915Link to BLAST:NP_001346915.1
Original member Current member NCBI NM_001359987.1 NP_001346916.1 Accepted alive Link to Nucleotide Sequence:NM_001359987.1Link to Protein Sequence:NP_001346916.1Re-query CCDS DB by Nucleotide ID:NM_001359987Re-query CCDS DB by Protein ID:NP_001346916Link to BLAST:NP_001346916.1
Original member Current member NCBI NM_178741.4 NP_848856.1 Accepted alive Link to Nucleotide Sequence:NM_178741.4Link to Protein Sequence:NP_848856.1Re-query CCDS DB by Nucleotide ID:NM_178741Re-query CCDS DB by Protein ID:NP_848856Link to BLAST:NP_848856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346915.1 629 P59280 629 100% 0 0
NP_001346916.1 629 P59280 629 100% 0 0
NP_848856.1 629 P59280 629 100% 0 0

Chromosomal Locations for CCDS 19479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 103863068 103863191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103864202 103864403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103867493 103867652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103867845 103868013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103870529 103870640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103872031 103872174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103874203 103874389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103875741 103876289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103885907 103886149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGGCTTCAGAATCTACCAATGGGAAACAAGCTAGGAGTCACGTGACAAAGGGGCGGCGTCAGTACCAGC
ACCAGCACCAACAGCAGCAGCAACAGCAGCAGCAAGTGAGGAGCAGGTCCTCTGTCAGTGAGTGTGATGG
CGACGACTCCTTCATCTTCGAAGCCAACGAGGCCTGGAAGGACTTTCACGGCTCTCTCCTGGGCTTCTAT
GAAAACGGGGAGCTCTGCGACGTCACCCTGAAGGTTGGCTCAAAGCTAATATCTTGTCACAAACTGGTGC
TGGCTTGTGTGATCCCCTACTTCAGAGCCATGTTTCTTTCCGAAATGTCTGAAGCCAAGCAGGCGTTAAT
CGAGATCCGAGACTTTGACGGTGATGCCGTGGAAGACTTGGTGAAGTTTGTCTACTCCTCACGGCTCACT
TTAACAGTGGACAATGTCCAGCCCCTGCTGTATGCAGCGTGTATTCTGCAGGTTGAGCTGGTGGCCAGAG
CTTGTTGTGAATACATGCAGCTACACTTTCATCCCTCCAACTGCCTGGCTGTACGAGCCTTCGCAGAGAG
TCACAACCGAATAGACCTAATGGACATGGCGGACCAGTATGCCTGTGAGCACTTTACTGAAGTGGTGGAG
TGCGAAGACTTCGTGAGTGTGTCCCCGCAACATCTCCACAAGCTCCTCTCCTCTAGCGACCTCAACATTG
ACAGTGAGAAGCAGGTCTACAGTGCTGCCATCAAGTGGCTTCTTGCCAATCCGCAACATCATCCTAAATG
GCTGGACGAGACACTTGCACAGGTCCGTCTGCCATTGCTGCCAGTTGATTTTCTCATGGGTGTTGTGGCG
AAAGAACAGATCGTCAAGCAGAATCTGAAGTGCAGAGATCTGCTGGACGAAGCGAGAAATTACCACCTTC
ACTTGAGCAGTAAACCAGTCCCGGACTTTGAGTACACAGTCAGGACGACCCCGAGGAAGCACACTGCTGG
TGTGCTGTTTTGTGTGGGTGGTCGAGGTGGATCTGGTGACCCCTTCCGTAGTATTGAATGCTATTCTATC
AACAAAAACAGCTGGTTCTTTGGACCAGAAATGAACAGCCGCAGGCGACATGTGGGTGTGATCTCTGTGG
AAGGGAAGGTGTACGCAGTGGGTGGCCATGATGGGAACGAACACCTGGGCAGCATGGAGATGTTTGACCC
TCTCACTAACAAGTGGATGATGAAGGCATCGATGAACACCAAGAGGCGAGGAATTGCCTTGGCCTCCTTA
GGGGGCCCAATATATGCAATTGGAGGATTAGATGACAATACGTGCTTCAGTGACGTGGAGAGATACGACA
TCGAATCTGACCAATGGAGCACAGTGGCACCAATGAACACTCCCCGTGGAGGCGTTGGCTCTGTGGCTTT
AATAAACCACGTTTACGCAGTGGGCGGCAACGACGGCGTAGCCTCCTTATCCAGTGTGGAGAGGTATCAC
CCGCATCTGGACAAGTGGATAGAAGTGAAAGAGATGGGTCAGCGCAGAGCTGGCAACGGCGTCAGCGAGC
TTCACGGTTGTTTATATGTTGTTGGTGGTTTTGACGACAACTCCCCTTTGAGTTCCGTGGAACGGTACGA
CCCTCGAAGCAACAAGTGGGACTATGTGGCAGCTCTTACCACTCCCAGGGGTGGCGTAGGGATCGCAACA
GTGATGGGCAAAATCTTTGCAGTTGGCGGTCACAATGGCAACGCGTACCTAAACACCGTGGAGGCGTTTG
ACCCCGTGCTGAACAAGTGGGAGCTGGTCGGACCTGTGTCTCACTGCCGAGCTGGTGCCGGTGTGGCCGT
GTGTGACTGTTTAACTAGCCAGATCCGAGACGTGGGTCACGGGTCCACTAATGTGGTTGACTGTATGTGA

Translation (629 aa):
MASESTNGKQARSHVTKGRRQYQHQHQQQQQQQQQVRSRSSVSECDGDDSFIFEANEAWKDFHGSLLGFY
ENGELCDVTLKVGSKLISCHKLVLACVIPYFRAMFLSEMSEAKQALIEIRDFDGDAVEDLVKFVYSSRLT
LTVDNVQPLLYAACILQVELVARACCEYMQLHFHPSNCLAVRAFAESHNRIDLMDMADQYACEHFTEVVE
CEDFVSVSPQHLHKLLSSSDLNIDSEKQVYSAAIKWLLANPQHHPKWLDETLAQVRLPLLPVDFLMGVVA
KEQIVKQNLKCRDLLDEARNYHLHLSSKPVPDFEYTVRTTPRKHTAGVLFCVGGRGGSGDPFRSIECYSI
NKNSWFFGPEMNSRRRHVGVISVEGKVYAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIALASL
GGPIYAIGGLDDNTCFSDVERYDIESDQWSTVAPMNTPRGGVGSVALINHVYAVGGNDGVASLSSVERYH
PHLDKWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIAT
VMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQIRDVGHGSTNVVDCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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