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Report for CCDS19462.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19462.2 Public Mus musculus 5 Lin54 23 108 98 CCDS HistoryNCBI Gene:231506Re-query CCDS DB by CCDS ID:19462.2Re-query CCDS DB by GeneID:231506See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 19462.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19462.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046154.11 ENSMUSP00000041374.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046154.11Link to Ensembl Protein Viewer:ENSMUSP00000041374.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046154Re-query CCDS DB by Protein ID:ENSMUSP00000041374
Original member Current member EBI ENSMUST00000123572.7 ENSMUSP00000123425.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123572.7Link to Ensembl Protein Viewer:ENSMUSP00000123425.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123572Re-query CCDS DB by Protein ID:ENSMUSP00000123425
Original member Current member NCBI NM_001115010.1 NP_001108482.1 Accepted alive Link to Nucleotide Sequence:NM_001115010.1Link to Protein Sequence:NP_001108482.1Re-query CCDS DB by Nucleotide ID:NM_001115010Re-query CCDS DB by Protein ID:NP_001108482Link to BLAST:NP_001108482.1
Original member NCBI NM_172714.4 NP_766302.2 Updated not alive Link to Nucleotide Sequence:NM_172714.4Link to Protein Sequence:NP_766302.2Re-query CCDS DB by Nucleotide ID:NM_172714Re-query CCDS DB by Protein ID:NP_766302
Current member NCBI NM_172714.5 NP_766302.2 Accepted alive Link to Nucleotide Sequence:NM_172714.5Link to Protein Sequence:NP_766302.2Re-query CCDS DB by Nucleotide ID:NM_172714Re-query CCDS DB by Protein ID:NP_766302Link to BLAST:NP_766302.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108482.1 749 Q571G4-1 749 100% 0 0
NP_766302.2 749 Q571G4-1 749 100% 0 0

Chromosomal Locations for CCDS 19462.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 100444076 100444277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100446524 100446726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100450620 100450757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100450906 100451008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100452272 100452343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100453001 100453092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100453940 100454137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100454435 100454508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100459586 100459802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100475689 100475831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100480198 100480321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100485140 100485823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGGAGGTGGTGCCGGCCGAGGTGAATAGTTTGCTTCCAGACGACATAATGGACACTGCTATAACGTTAG
TGGATGAGGATAGTATTGAGGCTGTAATTGTGTCATCCCCAATTCCCATGGAGACAGAGCTGGAAGAAAT
TGTCAACATAAATTCTACCGGTGACTCTACAGCCACGCCCATTTCCACGGAACCAATCACAGTGTACAGT
AACCACACTAACCAAGTTGCAGTGAATACCACAGTTTCTAAAGCAGATTCTAATACCACAGTGAAACCAG
CATTTCCAAGTGGCCTTCAAAAACTTGGTGCTCAGACTCCTGTGACTATATCAGCCAATCAGATTATTTT
AAACAAAGTATCACAGACATCTGATCTTAAACTTGGCAATCAGACCCTTAAACCAGATGGACAGAAGTTA
ATATTAACAACTTTGGGCAAGTCTGGTTCACCAATTGTTTTAGCACTACCCCATAGCCAACTACCCCAGG
CTCAGAAAGTTACAGCTCAGGCCCAGCCAGGAGATGCTAAGTTACCACCGCAGCAAATTAAAGTAGTTAC
CATTGGAGGGAGGCCAGAGGTGAAACCTGTCATTGGTGTCTCAGCACTGACCCCAGGAAGCCAACTGATT
AATACTACAACTCAGCCCTCTGTGTTACAGACCCAACAGTTAAAAACAGTACAGATTGCTAAGAAGCCTC
GGACACCAACCTCGGGTCCAGTGATCACGAAGCTGATTTTTGCAAAACCAATTAATAGCAAAGCAGTTAC
AGGACAGACAACTCAAGCATCTCCACCCGTCGTCACAGGTAGGGTTCTTTCACAGTCTACTCCTGGAACT
CCATCAAAGACTATAACAATATCAGAAAGTGGTGTGATTGGATCAACTTTAAATTCGACAACACAGACAC
CAAATAAGATAGCCATCTCACCTTTGAAGTCGCCAAATAAGACAGTGAAATCGGCTGTGCAGACCATCAC
TGTGGGAGGAATGAGCACCTCACAGTTTAAGACCATCATCCCTCTGGCCACTGCTCCCAATGTCCAGCAG
ATTCAAGTGCCTGGAAGCAAGTTTCATTATGTCCGACTTGTTACTGCCACAACAGCCAGTAGCTCAGCCC
AGCCAGTCAGTCAGAGCCCCAGTGTAAACACACAGCCTCTCCAGCAAGCAAAACCAGTGGTTGTTAATAC
CACCCCTGTACGGATGTCAGTTCCATTTGTCCAAGCTCAGGCCGTTAAGCAAGTTGTTCCAAAACCAATC
AATTCAACTTCACAAATTGTAACTACCAGCCAGCCACAGCAGCGGCTCATCATGCCTGCCACACCACTGC
CTCAGATCCAGCCCAACCTCACTAACCTGCCACCAGGTACTGTGCTGGCACCAGCTCCAGGAACAGGGAA
TGTGGGCTATGCAGTGCTTCCAGCTCAGTATGTTACTCAGTTACAGCAGTCTTCATATGTGTCTATAGCA
AGCAACTCTAATTTTACTGGAACATCTGGCATCCAGACACAGGCAAGGCTTCCATTCAATGGCATAATTC
CATCAGAGTCTACCAGTCGGCCCAGAAAACCCTGTAACTGTACAAAATCACTGTGTTTGAAATTATACTG
TGATTGCTTTGCAAATGGTGAATTCTGCAACAACTGCAACTGTACCAATTGTTACAACAATTTAGAGCAC
GAGAATGAGAGACAAAAGGCAATCAAGGCATGCCTTGATAGAAATCCGGAAGCCTTCAAGCCAAAGATAG
GAAAAGGAAAAGAGGGGGAGTCGGATCGGCGGCACAGCAAAGGCTGCAACTGCAAACGCTCGGGGTGTCT
TAAAAACTACTGCGAGTGCTATGAGGCAAAAATAATGTGTTCTTCTATATGCAAATGCATCGGCTGTAAG
AATTTTGAAGAAAGCCCAGAACGGAAGACATTGATGCACTTAGCAGATGCGGCTGAAGTAAGGGTCCAGC
AGCAGACAGCAGCGAAGACCAAGCTGTCCTCTCAGATCTCAGACCTCCTTACAAGGCCAACCCCAGCTCT
CAACAGTGCAGGAGGGAAATTGCCGTTTACATTTGTAACTAAAGAAGTAGCTGAAGCCACGTGTAATTGC
CTTCTTGCCCAGGCAGAGCAGGCAGACAAGAAGGGGAAATCAAAGGCGGCAGCAGAGCGGATGATACTTG
AGGAATTTGGACGATGTTTGATGAGCGTCATCAACTCTGCAGGAAAAGCCAAAAGTGACCCCTGTGCCAT
GCACTGCTAA

Translation (749 aa):
MEVVPAEVNSLLPDDIMDTAITLVDEDSIEAVIVSSPIPMETELEEIVNINSTGDSTATPISTEPITVYS
NHTNQVAVNTTVSKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKL
ILTTLGKSGSPIVLALPHSQLPQAQKVTAQAQPGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLI
NTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQASPPVVTGRVLSQSTPGT
PSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVKSAVQTITVGGMSTSQFKTIIPLATAPNVQQ
IQVPGSKFHYVRLVTATTASSSAQPVSQSPSVNTQPLQQAKPVVVNTTPVRMSVPFVQAQAVKQVVPKPI
NSTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIA
SNSNFTGTSGIQTQARLPFNGIIPSESTSRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEH
ENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCK
NFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSAGGKLPFTFVTKEVAEATCNC
LLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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