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Report for CCDS19347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19347.1 Public Mus musculus 5 Lnx1 23 108 98 CCDS HistoryNCBI Gene:16924Re-query CCDS DB by CCDS ID:19347.1Re-query CCDS DB by GeneID:16924See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19347.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039744.12 ENSMUSP00000040098.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039744.12Link to Ensembl Protein Viewer:ENSMUSP00000040098.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039744Re-query CCDS DB by Protein ID:ENSMUSP00000040098
Original member Current member EBI ENSMUST00000117525.7 ENSMUSP00000113837.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117525.7Link to Ensembl Protein Viewer:ENSMUSP00000113837.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117525Re-query CCDS DB by Protein ID:ENSMUSP00000113837
Original member Current member NCBI NM_001159579.1 NP_001153051.1 Accepted alive Link to Nucleotide Sequence:NM_001159579.1Link to Protein Sequence:NP_001153051.1Re-query CCDS DB by Nucleotide ID:NM_001159579Re-query CCDS DB by Protein ID:NP_001153051Link to BLAST:NP_001153051.1
Original member Current member NCBI NM_010727.4 NP_034857.3 Accepted alive Link to Nucleotide Sequence:NM_010727.4Link to Protein Sequence:NP_034857.3Re-query CCDS DB by Nucleotide ID:NM_010727Re-query CCDS DB by Protein ID:NP_034857Link to BLAST:NP_034857.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153051.1 628 O70263-2 628 100% 0 0
NP_034857.3 628 O70263-2 628 100% 0 0

Chromosomal Locations for CCDS 19347.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 74597275 74597410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74597776 74597934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74606037 74606262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74607737 74607905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74610677 74610811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74619974 74620345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74623482 74623684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74627348 74627500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74628120 74628361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 74677508 74677599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGAAGGCGCTGCTGCTTCTGGTCCTGCCCTGGCTGAGTCCAGCTAACTACATTGACAATGTGGGCAACC
TGCACTTCCTGTACTCGGAACTCTGCAAAGGGGCCTCCCACTATGGCCTGACCAAGGACAGGAAAAGGCG
CTCTCAAGATGGCTGTCCTGATGGTTGCGCCAGCCTCATGGCAACGACGCTCTCCCCAGAGGTTTCTGCA
GCCGCCACCATCTCTTTAATGACAGATGAGCCTGGCCTAGACAACCCTGCCTACGTGTCCTCGGTGGAGG
ATGGTGAGCCAGTAGCCAACTCCTCAGACTCTGGCCGGAGCAACCGGACTAGGGCACGGCCCTTTGAGCG
CTCCACTATGAGAAGCCGGTCTTTCAAGAAGATCAACCGAGCTCTAAGTGCTCTCCGGAGGACGAAGAGC
GGGAGTGTCGTTGCCAACCATGTTGACCAGGGCAGGGACAACTCTGAGAACACCACTGTCCCCGAAGTCT
TCCCAAGGTTGTTTCACCTGATTCCAGATGGTGAAATTACAAGCATCAAAATCAACAGAGCGGATCCCAG
CGAAAGCCTCTCCATAAGGCTGGTGGGGGGCAGCGAGACGCCGCTGGTCCACATCATCATCCAGCATATT
TATCGCGATGGAGTGATTGCCAGAGATGGACGGCTGCTGCCAGGAGACATCATTCTCAAGGTCAACGGCA
TGGACATCAGCAATGTCCCTCATAACTATGCCGTGCGGCTCCTGCGGCAGCCCTGCCAGGTGCTGCGGCT
AACGGTGCTGCGGGAGCAGAAGTTCCGTAGCAGAAGCAATGCGCACGTGCCGGACTCCTATGGACCTCGG
GATGACAGCTTCCATGTAATCCTCAACAAAAGCAGCCCCGAGGAGCAGCTTGGCATAAAGCTGGTGCGCC
GGGTGGATGAGCCCGGCGTGTTCATCTTCAACGTGCTAAATGGGGGTGTCGCCGACCGACACGGCCAGCT
GGAGGAGAATGACCGTGTGCTGGCCATCAACGGGCATGACCTTCGATTTGGCAGTCCAGAGAGTGCAGCT
CATCTGATTCAGGCCAGTGAAAGACGCGTCCATCTCGTCGTGTCCCGCCAGGTTCGACAGTCCAGCCCAG
ACATCTTTCAAGAAGCTGGCTGGATCAGCAATGGCCAGCAATCCCCAGGCCCAGGAGAGAGGAACACAGC
TTCTAAGCCTGCAGCCACCTGTCATGAGAAGGTTGTAAGTGTCTGGAAAGACCCCAGCGAGTCTCTCGGC
ATGACCGTCGGAGGGGGAGCATCCCACAGGGAATGGGACTTGCCCATCTATGTCATCAGTGTTGAACCCG
GCGGAGTCATAAGCAGAGACGGGAGAATAAAAACAGGTGACATTTTATTGAATGTGAATGGGATTGAGCT
CACAGAGGTCAGCCGGACAGAGGCCGTTGCCATACTGAAGAGCGCACCCTCCTCAGTGGTACTCAAAGCC
TTGGAAGTCAAGGAACAGGAGGCCCAGGAAGACTGCAGCCCAGCAGCCCTGGACTCCAACCACAACGTGA
CCCCGCCTGGTGACTGGTCCCCATCCTGGGTCATGTGGCTGGAATTACCACAGTACTTATGTAACTGTAA
AGATGTGATACTGCGAAGGAACACAGCTGGAAGCCTGGGCTTCTGCATTGTGGGAGGTTATGAAGAATAC
AGTGGGAACAAACCTTTTTTTATCAAGTCCATTGTTGAAGGAACACCTGCATACAATGACGGAAGAATCA
GATGTGGTGACATTCTTCTCGCTGTCAACGGTAGAAGTACATCGGGTATGATACACGCTTGCCTGGCCAG
GATGCTCAAGGAACTTAAAGGGAGAATTACTCTGACCATTGCTTCTTGGCCTGGTACTTTTTTATAA

Translation (628 aa):
MKALLLLVLPWLSPANYIDNVGNLHFLYSELCKGASHYGLTKDRKRRSQDGCPDGCASLMATTLSPEVSA
AATISLMTDEPGLDNPAYVSSVEDGEPVANSSDSGRSNRTRARPFERSTMRSRSFKKINRALSALRRTKS
GSVVANHVDQGRDNSENTTVPEVFPRLFHLIPDGEITSIKINRADPSESLSIRLVGGSETPLVHIIIQHI
YRDGVIARDGRLLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLRLTVLREQKFRSRSNAHVPDSYGPR
DDSFHVILNKSSPEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAA
HLIQASERRVHLVVSRQVRQSSPDIFQEAGWISNGQQSPGPGERNTASKPAATCHEKVVSVWKDPSESLG
MTVGGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVNGIELTEVSRTEAVAILKSAPSSVVLKA
LEVKEQEAQEDCSPAALDSNHNVTPPGDWSPSWVMWLELPQYLCNCKDVILRRNTAGSLGFCIVGGYEEY
SGNKPFFIKSIVEGTPAYNDGRIRCGDILLAVNGRSTSGMIHACLARMLKELKGRITLTIASWPGTFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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