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Report for CCDS19286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19286.1 Public Mus musculus 5 Sepsecs 23 108 98 CCDS HistoryNCBI Gene:211006Re-query CCDS DB by CCDS ID:19286.1Re-query CCDS DB by GeneID:211006See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031069.12 ENSMUSP00000031069.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031069.12Link to Ensembl Protein Viewer:ENSMUSP00000031069.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031069Re-query CCDS DB by Protein ID:ENSMUSP00000031069
Original member Current member NCBI NM_172490.4 NP_766078.1 Accepted alive Link to Nucleotide Sequence:NM_172490.4Link to Protein Sequence:NP_766078.1Re-query CCDS DB by Nucleotide ID:NM_172490Re-query CCDS DB by Protein ID:NP_766078Link to BLAST:NP_766078.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766078.1 504 Q6P6M7 504 100% 0 0

Chromosomal Locations for CCDS 19286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 52643804 52644107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52647116 52647206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52647598 52647691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52656014 52656105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52656226 52656355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52660630 52660732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52664168 52664321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52665236 52665394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52665988 52666106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52668899 52669053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52669575 52669688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGAACCCGGAGAGCTTCGCGGCGGGCGAGCGGCGGGTGTCTCCGGCTTACGTGAGGCAGGGCTGCGAGG
CTCGGCGCGCCCACGAGCACCTCATCCGGCTGCTTCTAGAGCAGGGCAAGTGTCCAGAGGATGGCTGGGA
TGAAAGTACCCTCGAACTCTTTCTGCATGAGCTTGCAGTCATGGATAGCAACAATTTCTTGGGTAATTGT
GGTGTGGGAGAAAGGGAAGGGAGAGTGGCCTCTGCTTTGGTTGCTCGACGACATTACAGGTTCATCCACG
GAATTGGACGATCCGGTGATATTTCTGCTGTGCAACCAAAAGCTGCAGGCTCTAGCCTCTTGAACAAAAT
TACTAATTCTTTGGTGCTTAATGTCATAAAGCTTGCTGGTGTTCATTCAGTGGCCAGTTGCTTTGTAGTT
CCTATGGCAACTGGGATGAGTCTAACCTTGTGTTTCCTGACACTACGACACAAAAGACCAAAGGCCAAGT
ATATCATATGGCCACGGATAGACCAGAAGTCCTGCTTTAAGTCCATGGTCACTGCAGGTTTTGAACCCGT
GGTAATAGAAAACGTATTGGAAGGTGATGAGCTGCGCACAGACCTGAAAGCCGTGGAGGCTAAAATCCAG
GAGCTCGGGCCGGAGCACATCCTGTGCCTTCATTCTACCACAGCCTGCTTTGCTCCAAGGGTGCCCGATA
GATTAGAAGAACTGGCTGTGATTTGTGCTAATTATGACATTCCACATGTAGTCAACAACGCTTATGGATT
ACAGTCTTCAAAGTGCATGCATCTCATTCAGCAGGGGGCTCGGGTTGGTAGAATTGATGCTTTCGTTCAG
AGCTTGGACAAAAATTTTATGGTTCCAGTAGGTGGTGCTATAATTGCTGGCTTTAATGAGCCCTTCATTC
AGGACATCAGCAAGATGTATCCAGGAAGAGCCTCAGCCTCGCCGTCCTTAGACGTCCTCATCACCTTGCT
GTCACTGGGCTGCAGTGGCTACAGGAAGCTGTTGAAGGAGAGAAAGGAAATGTTTGTCTATTTATCCACC
CAACTAAAGAAGTTGGCAGAGGCCCACAATGAAAGACTACTACAGACACCTCACAACCCTATATCCTTAG
CTATGACACTTAAGACGATAGATGGACACCATGACAAAGCTGTCACTCAGCTTGGCTCAATGCTTTTTAC
CAGACAAGTGTCTGGAGCCAGGGCTGTGCCTCTTGGGAACGTGCAAACTGTGAGTGGCCATACTTTTCGA
GGCTTCATGTCCCATGCAGATAATTACCCCTGTGCTTACCTCAATGCGGCAGCAGCCATCGGGATGAAGA
TGCAGGATGTGGACCTGTTCATAAAGAGACTTGACAAGTGCTTAAACATAGTAAGGAAAGAACAGACTAG
AGCAAGTGTTGTGTCTGGAGCTGACCGCAACAAAGCTGAAGATGCGGACATTGAGGAAATGGCTTTGAAA
CTGGATGACGTGCTTGGGGATGTGGGCCAGGGCCCTGCTCTATGA

Translation (504 aa):
MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNC
GVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVV
PMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQ
ELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQ
SLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLST
QLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFR
GFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTRASVVSGADRNKAEDADIEEMALK
LDDVLGDVGQGPAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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