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Report for CCDS19263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19263.1 Public Mus musculus 5 Fbxl5 23 108 98 CCDS HistoryNCBI Gene:242960Re-query CCDS DB by CCDS ID:19263.1Re-query CCDS DB by GeneID:242960See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087465.10 ENSMUSP00000084733.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087465.10Link to Ensembl Protein Viewer:ENSMUSP00000084733.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087465Re-query CCDS DB by Protein ID:ENSMUSP00000084733
Original member NCBI NM_178729.4 NP_848844.1 Updated not alive Link to Nucleotide Sequence:NM_178729.4Link to Protein Sequence:NP_848844.1Re-query CCDS DB by Nucleotide ID:NM_178729Re-query CCDS DB by Protein ID:NP_848844
Current member NCBI NM_178729.5 NP_848844.1 Accepted alive Link to Nucleotide Sequence:NM_178729.5Link to Protein Sequence:NP_848844.1Re-query CCDS DB by Nucleotide ID:NM_178729Re-query CCDS DB by Protein ID:NP_848844Link to BLAST:NP_848844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848844.1 623 Q8C2S5-3 623 100% 0 0

Chromosomal Locations for CCDS 19263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43758197 43758944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43759743 43759825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43760707 43760855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43762817 43762942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43765309 43765491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43768064 43768250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43770737 43770832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43773444 43773659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43781965 43782048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGGCGCCCTTCCCCGATGAAGTGGACGTCTTCACCGCCCCGCACTGGCGGATGAAGCAGCTGGTGGGGC
GCTACTGCGACAAGCTTTCTAAAACCAACTTTTCCAACAACAATGACTTCCGTGCTCTTCTCCAGTCTTT
ATATGCTACTTTCAAGGAGTTTAAAATGCATGAACAAATTGAAAATGAATACATTATCGGTTTACTTCAG
CAGCGCAGTCAGACCATATATAATGTACACTCTGACAATAAGCTCTCCGAGATGCTGAGTCTCTTTGAAA
AGGGGCTGAAGAATGTCAAGAATGAGTACGAACAGTTAAATTATGCAAAACAGCTGAAAGAGAGATTGGA
GGCTTTTACAAGAGATTTTCTTCCTCACATGAAAGAGGAAGAAGAGGTTTTTCAGCCCATGTTAATGGAA
TATTTTACCTACGAGGAGCTTAAAGATATCAAAAAGAAAGTGATTGCACAGCACTGCTCACAGAAGGACA
CGGCAGAGCTCCTCAGAGGGCTCAGTCTGTGGAACCAAGCTGAGGAGCGACAGAAAGTTCTCAAGTACTC
TGTGGATGAGAAGGCAGATACAGAAGCGGAAGTGTCAGAACACTCCACAGGTATAACCCATCTTCCTCCT
GAGGTAATGCTGTCCATTTTCAGTTACCTTAATCCTCAAGAATTGTGTCGGTGTAGTCAAGTCAGTACTA
AGTGGTCTCAGCTGGCAAAAACAGGATCTTTGTGGAAACATCTTTACCCTGTTCATTGGGCAAGAGGTGA
CTGGTATAGTGGTCCTGCCACTGAACTTGATACTGAGCCTGATGAGGAATGGGTGAGAAATAGGAAAGAT
GAAAGTCGTGCTTTCCAGGAGTGGGATGAAGATGCCGATATAGATGAATCTGAAGAGTCTGCAGAGGAAT
CGGTTGCTATCAGCATTGCACAAATGGAAAAACGTGTACTCCATGGCTTAATTCATAATGTTCTGCCATA
TGTTGGTACCTCTGTAAAAACTTTAGTGTTAGCGTACAGCTCTGCAGTCTCCAGCAAAATGGTTAGGCAG
ATTTTAGAGCTTTGTCCTAACCTGGAACATCTGGATCTTACCCAGACCGACATTTCTGATTCTGCATTTG
ACAGTTGGTCTTGGCTCGGTTGCTGCCAGAGTCTTCGGCATCTTGATCTGTCTGGATGTGAAAAAATCAC
AGACATGGCTCTAGAGAAGATTTCTAGAGCTCTTGGAGTTCTGACATCTCATCAGAGTGGCTTTCTGAAA
AGTGCAGGCAAGGCTGCTTCAACTCCATGGACAAGTAAAGACATTACCATGCCATCCACCACGCAGTATG
CCTGTTTGCACAATTTAACTGACAAAGGCATTGGTGAAGAAATAGACAACGAGCACTCTTGGACTGAACC
TGTGTCTTCTGAAAGTTTGACTTCTCCTTATGTGTGGATGCTAGATGCTGAAGATTTGGCTGATATTGAA
GATGCTGTAGAGTGGAGACACAGAAATGTTGAGAGTCTCTGTGTGATGGAAACAGCCTCCAACTTTGGTT
GTTCCTCATCTGGTTGTTACAGTAAGGACATTGTGGGATTAAGGACTAGTGTCTGTTGGCAGCAGCATTG
TGCTTCTCCAGCCTTTGCATATTGTGGTCATTCATTCTGTTGTACAGGGACAGCTTTAAGAACTATGACT
ACACTCCCAGCGACTTCTGCAATGTGTAGAAAAGCATTAAGGACTACATTGCCCAGGGGGAAAGACTTAA
TTTATTTTGGGAGTGAAAAGTCTGACCAAGAGACTGGACGAGTACTTTTGTTCCTCAGTCTGTCTGGATG
TTACCAGATCACAGACCATGGTCTCAGGTGGGTGATCAGCCCTAGTTGTTAG

Translation (623 aa):
MAPFPDEVDVFTAPHWRMKQLVGRYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQ
QRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLME
YFTYEELKDIKKKVIAQHCSQKDTAELLRGLSLWNQAEERQKVLKYSVDEKADTEAEVSEHSTGITHLPP
EVMLSIFSYLNPQELCRCSQVSTKWSQLAKTGSLWKHLYPVHWARGDWYSGPATELDTEPDEEWVRNRKD
ESRAFQEWDEDADIDESEESAEESVAISIAQMEKRVLHGLIHNVLPYVGTSVKTLVLAYSSAVSSKMVRQ
ILELCPNLEHLDLTQTDISDSAFDSWSWLGCCQSLRHLDLSGCEKITDMALEKISRALGVLTSHQSGFLK
SAGKAASTPWTSKDITMPSTTQYACLHNLTDKGIGEEIDNEHSWTEPVSSESLTSPYVWMLDAEDLADIE
DAVEWRHRNVESLCVMETASNFGCSSSGCYSKDIVGLRTSVCWQQHCASPAFAYCGHSFCCTGTALRTMT
TLPATSAMCRKALRTTLPRGKDLIYFGSEKSDQETGRVLLFLSLSGCYQITDHGLRWVISPSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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