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Report for CCDS19221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19221.1 Public Mus musculus 5 Msantd1 23 108 98 CCDS HistoryNCBI Gene:403174Re-query CCDS DB by CCDS ID:19221.1Re-query CCDS DB by GeneID:403174See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050535.1 ENSMUSP00000057362.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050535.1Link to Ensembl Protein Viewer:ENSMUSP00000057362.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000050535Re-query CCDS DB by Protein ID:ENSMUSP00000057362
Original member Current member NCBI NM_207277.1 NP_997160.1 Accepted alive Link to Nucleotide Sequence:NM_207277.1Link to Protein Sequence:NP_997160.1Re-query CCDS DB by Nucleotide ID:NM_207277Re-query CCDS DB by Protein ID:NP_997160Link to BLAST:NP_997160.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997160.1 278 Q8BIL2 278 100% 0 0

Chromosomal Locations for CCDS 19221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34917596 34917915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34921404 34921679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34923324 34923564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGGTGCGCTGGCCAGGCCTGAGGCCCTGCCTGAGTGCCATCCTTAACCCTGCAGGTGCCTCCAACATGG
CAGCAGCCGAAGTGCCTGGCTACCTTGTGTCTCCTCAGACGGAGAAGCATCGGAGGGCCCGCAACTGGAC
AGATGCAGAGATGCGCGGCCTCATGCTGGTCTGGGAGGAGTTCTTTGATGAGCTCAAGCAGACCAAGCGC
AATGCCAAGGTGTACGAGAAGATGGCCAGCAAGCTCTTTGAGATGACTGGGGAGCGACGGCTAGGCGAGG
AGATCAAGATCAAAATCACCAACATGACCTTCCAGTACAGGAAATTAAAATGCATGACAGATAGCGAGTC
CATCCCGCCGGACTGGCCCTATTACCTAGCCATTGATAGGATTCTGGCCAAGGTCCCTGAGTCCTGTGAG
GGCAAACTGCCGGATGGCCAGCAGCCGGGGCCCTCTACGTCCCAGACCGAGGCGTCCCTGTCGCCGTCTG
CTAAGTCCACCCCTCTGTACTTACCGTATACCCAGTGCTCCTATGAAGGCCACTTCGAGGACGATCGCTC
CGACAGCTCCTCCAGCTTACTGTCCCTTAAGTTCAGGTCAGAGGAACGCCCCGTGAAGAAACGCAAGATG
CGGAGCTGTCACCTACAGAAAAAGAAGCTGCGACTGCTGGAGGCCATGCTGGAGGAACAGCGCCGGCTGA
GCCGTGCCATGGAGGAGACATGCCGAGAGGTGCGCCGTGTGCTGGACCAGCAGAACATCCTGCAGGTCCA
GAGCCTGCAGCTTCAGGAGCGAATGATGAGCCTACTGGAGAAGATCATTGCCAAGTCCAACGTCTAG

Translation (278 aa):
MVRWPGLRPCLSAILNPAGASNMAAAEVPGYLVSPQTEKHRRARNWTDAEMRGLMLVWEEFFDELKQTKR
NAKVYEKMASKLFEMTGERRLGEEIKIKITNMTFQYRKLKCMTDSESIPPDWPYYLAIDRILAKVPESCE
GKLPDGQQPGPSTSQTEASLSPSAKSTPLYLPYTQCSYEGHFEDDRSDSSSSLLSLKFRSEERPVKKRKM
RSCHLQKKKLRLLEAMLEEQRRLSRAMEETCREVRRVLDQQNILQVQSLQLQERMMSLLEKIIAKSNV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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