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Report for CCDS19208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19208.1 Public Mus musculus 5 Nelfa 23 108 98 CCDS HistoryNCBI Gene:24116Re-query CCDS DB by CCDS ID:19208.1Re-query CCDS DB by GeneID:24116See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030993.7 ENSMUSP00000030993.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030993.7Link to Ensembl Protein Viewer:ENSMUSP00000030993.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030993Re-query CCDS DB by Protein ID:ENSMUSP00000030993
Original member NCBI NM_011914.3 NP_036044.1 Updated not alive Link to Nucleotide Sequence:NM_011914.3Link to Protein Sequence:NP_036044.1Re-query CCDS DB by Nucleotide ID:NM_011914Re-query CCDS DB by Protein ID:NP_036044
Current member NCBI NM_011914.4 NP_036044.1 Accepted alive Link to Nucleotide Sequence:NM_011914.4Link to Protein Sequence:NP_036044.1Re-query CCDS DB by Nucleotide ID:NM_011914Re-query CCDS DB by Protein ID:NP_036044Link to BLAST:NP_036044.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036044.1 530 Q8BG30 530 100% 0 0

Chromosomal Locations for CCDS 19208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33898725 33898909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33899012 33899111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33899282 33899553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33900413 33900524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33901191 33901279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33901588 33901657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33901745 33901875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33903371 33903460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33920492 33920653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33921846 33922017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33936026 33936235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGCTTCCATGAGGGAGAGTGACACCGGCCTGTGGCTGCACAACAAGCTGGGCGCCACGGACGAGCTGT
GGGCGCCACCCAGCATCGCGTCCCTGCTCACCGCCGCGGTCATCGATAACATCCGCCTCTGCTTCCACCG
CCTCTCCTCGGCCGTGAAGCTCAAGCTACTGCTCGGGACGCTGCATCTCCCGCGCCGCACCGTGGACGAG
ATGAAGGCGGCTCTGATGGATATCATCCAGCTGGCCACGCTGGACTCAGACCCCTGGGTCCTCATGGTTG
CTGACATTCTGAAGTCCTTCCCTGACACGGGCTCCTTGAATCTGGACCTTGAGGAACAGAACCCCAATGT
TCAAGACATCTTAGGAGAACTTAGAGAAAAAGTGAGTGAGTGCGAGGCATCTGCCATGCTACCACTGGAG
TGCCAGTACCTGAACAAGAATGCCCTGACCACCCTTGCTGGGCCCCTCACCCCACCAGTCAAGCATTTTC
AGCTAAAGCGGAAACCTAAGAGTGCCACGCTGCGGGCAGAACTGCTGCAGAAATCTACCGAGACAGCCCA
GCAGCTGAAGAGAAGTGCTGGGGTCCCATTCCACGCTAAGGGCCGGGGGCTGCTTCGAAAGATGGACACT
ACAACCCCTCTCAAAGGCATTCCGAAGCAAGCCCCCTTCCGAAGTCCCACCACACCCAGCGTCTTCAGTC
CTTCTGGGAACCGGACTCCAATACCACCTTCGAGGACGCCACTGCAGAAAGAAAGGGGTGTGAAGCTGCT
GGATATTTCTGAGCTGAATACAGTTGGTGCTGGACGAGAGGCAAAGAGGAGGAGGAAGACTTTAGACACA
GAAGTGGTAGAAAAGCCCACCAAGGAAGAGACGGTTGTTGAAAACGCTACCCCTGACTATGCTGCTGGCC
TGGTATCCACACAGAAACTTGGGTCTCTGAACAGTGAGCCAACACTGCCCTCCACAAGTTACCTGCCCTC
TACACCCAGTGTGGTACCTGCCTCATCTTACATCCCCAGCTCTGAGACTCCCCCAGCTCCACCCTCTCGG
GAAGCCAGCCGGCCACCTGAGGAACCCAGCGCTCCAAGTCCCACACTGCCAACACAGTTTAAACAAAGGG
CACCTATGTATAACAGTGGCCTGAGCCCAGCTACACCAGCACCTGCAGCACCTACCTCACCTCTGACACC
TACTACTCCCCCAGCTGTCACTCCTACTGCTCAGACACCTCCAGTGGCCATGGTGGCCCCTCAGACCCAG
GCTCCAGCCCCTGTTCAGCAGCAACCTAAAAAGAACCTGTCCCTCACTAGAGAACAGATGTTTGCTGCCC
AGGAGATGTTCAAGACGGCAAACAAGGTCACTCGGCCGGAGAAGGCCCTCATCCTGGGCTTCATGGCTGG
CTCTCGAGAGAACCCATGCCCGGAGCAGGGGGATGTGATCCAGATCAAGCTCAGTGAACACACAGAGGAT
CTGCCCAAGGCAGACGGCCAGGGCAGTACCACCATGCTAGTGGACACAGTGTTCGAGATGAACTACGCCA
CAGGCCAGTGGACACGCTTCAAGAAGTACAAGCCTATGACCAATGTGTCCTAA

Translation (530 aa):
MASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHRLSSAVKLKLLLGTLHLPRRTVDE
MKAALMDIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILGELREKVSECEASAMLPLE
CQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDT
TTPLKGIPKQAPFRSPTTPSVFSPSGNRTPIPPSRTPLQKERGVKLLDISELNTVGAGREAKRRRKTLDT
EVVEKPTKEETVVENATPDYAAGLVSTQKLGSLNSEPTLPSTSYLPSTPSVVPASSYIPSSETPPAPPSR
EASRPPEEPSAPSPTLPTQFKQRAPMYNSGLSPATPAPAAPTSPLTPTTPPAVTPTAQTPPVAMVAPQTQ
APAPVQQQPKKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCPEQGDVIQIKLSEHTED
LPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTNVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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