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Report for CCDS19165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19165.1 Public Mus musculus 5 Agbl5 23 108 98 CCDS HistoryNCBI Gene:231093Re-query CCDS DB by CCDS ID:19165.1Re-query CCDS DB by GeneID:231093See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069705.10 ENSMUSP00000063228.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069705.10Link to Ensembl Protein Viewer:ENSMUSP00000063228.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069705Re-query CCDS DB by Protein ID:ENSMUSP00000063228
Original member NCBI NM_174849.3 NP_777274.1 Updated not alive Link to Nucleotide Sequence:NM_174849.3Link to Protein Sequence:NP_777274.1Re-query CCDS DB by Nucleotide ID:NM_174849Re-query CCDS DB by Protein ID:NP_777274
Current member NCBI NM_174849.4 NP_777274.1 Accepted alive Link to Nucleotide Sequence:NM_174849.4Link to Protein Sequence:NP_777274.1Re-query CCDS DB by Nucleotide ID:NM_174849Re-query CCDS DB by Protein ID:NP_777274Link to BLAST:NP_777274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777274.1 719 Q09M02-6 719 100% 0 0

Chromosomal Locations for CCDS 19165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30890166 30890380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30890599 30890770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30891060 30891223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30891813 30891990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30892438 30892616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30893005 30893461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30893901 30894070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30894375 30894510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30894997 30895199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30895766 30896051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGGAGCTGCGCTGTGGGGGATTGCTGTTCAGTTCTCGCTTTGATTCAGGGAACCTAGCCCATGTGGAAA
AGGTGGAGACTGTGTCTAGTGATGGGGAAGGCGTAGGAGGGGTGGCAACAGCCCCCGCTAGTGGGTCTGC
TGCTTCCCCTGACTACGAGTTCAACGTGTGGACCCGGCCTGACTGTGCTGAAACGGAATATGAAAATGGC
AACAGGTCATGGTTCTACTTCAGTGTCCGGGGAGGGACTCCAGGAAAGCTTATCAAGATCAACATTATGA
ACATGAACAAGCAAAGCAAACTGTATTCCCAGGGCATGGCCCCCTTTGTGCGCACACTGCCTTCCCGGCC
ACGCTGGGAACGCATTAGAGAGCGGCCCACCTTTGAGATGACAGAGACACAGTTTGTGCTATCCTTTGTT
CACCGTTTCGTAGAGGGCCGGGGAGCCACCACCTTCTTCGCCTTCTGCTACCCCTTCTCCTACAGTGACT
GCCAGGATCTGCTGAGCCAGCTAGACCAGCGCTTTTCAGAGAATTACTCTACCCATAGCAGTCCTCTGGA
TAGTATTTATTACCACCGAGAGCTTCTCTGCTATTCTCTGGATGGACTTCGTGTAGATCTACTAACAATC
ACTTCCTGCCATGGGCTTCGAGATGATCGGGAGCCCCGACTAGAGCAGCTATTTCCTGATCTCGGCACTC
CCCGACCATTCCGTTTCACAGGCAAAAGGATATTCTTCTTAAGCAGTAGGGTACACCCTGGAGAGACTCC
ATCTAGCTTTGTGTTCAATGGCTTTCTGGACTTCATCCTTCGACCTGATGATCCCCGGGCACAAACTCTC
CGTCGACTCTTTGTTTTTAAGTTGATTCCCATGTTAAACCCTGATGGTGTGGTCCGGGGCCACTACCGCA
CGGACTCCCGTGGAGTGAATCTGAACCGTCAGTACTTGAAGCCTGATGCCGTCCTGCACCCGGCCATCTA
TGGCGCCAAAGCTGTGCTGCTTTATCATCACGTGCACTCGAGGCTCAACGCCAAGAGTCCCACGAACCAG
CAACCCACTCTCCATCTCCCTCCGGAAGCCCCTCTCTCTGACCTCGAGAAAGCCAATAATCTCCACAATG
AAGCTCACCTCGGGCAGTCACCTGATGGGGAAAACCCTGCGACTTGGCCTGAGACAGAGCCAGCAGAAGA
GAAGACTGACCCTGTGTGGCTTATGCCACAGCCAATTCCTGAACTCGAGGAGCCAGCCCCTGACACCATC
CCCCCAAAAGAGAGTGGTGTTGCTTACTATGTAGACTTGCACGGACATGCTTCCAAAAGGGGCTGCTTCA
TGTATGGCAACAGCTTTAGTGACGAGAGCACCCAGGTGGAAAACATGCTATATCCAAAGCTCATCTCCTT
GAATTCAGCCCACTTTGACTTCCAGGGCTGCAATTTCTCAGAGAAGAACATGTATGCCCGAGACCGTAGA
GATGGCCAGTCCAAAGAGGGAAGCGGCCGTGTCGCAATCTACAAAGCCTCAGGGATAATCCACAGCTACA
CACTTGAATGCAACTACAACACTGGACGCTCAGTCAACAGCATCCCTGCTGCCTGCCATGACAACGGGCG
CGCCAGCCCCCCTCCCCCTCCGGCTTTCCCCTCCAGATACACTGTGGAACTATTCGAGCAGGTGGGGCGA
GCTATGGCCATCGCAGCTCTGGACATGGCAGAGTGTAATCCGTGGCCCCGAATTGTGCTGTCGGAACACA
GCAGCCTCACCAACCTGCGAGCCTGGATGCTGAGGCACGTGCGCAACAGCAGAGGGCTGACCAGTGCTGG
GAACATGGGCGCGAGCAAGAAGCGAGGGGCTCGAACCCCTCCCAAAAGCAACAACAGCTTGCCTGTTTCC
TGCTCTGAAAATGCTCTGAGCCGGGTTCGCAGTTTTAGCACCGGCACGAGTACTGGTGGCAGCAGCAGCA
GCCAACAAAACTCTCCACAGATGAAGAACTCTCCCAGCTTCCCTTTTCATGGCAGTCGGACTGCGGGGCT
ACCAGGCCTGGGCTCTAGCACCCAAAAGGTCAGCCATCGGGTGCTGGGCCCTGTCAGAGGTAAGCCAGTC
TGGGAGCCCCTGCAGCAGGTGTTTGGTTGCTTGGGGCATTGCTGGGGAGAAAGAGCTTGA

Translation (719 aa):
MELRCGGLLFSSRFDSGNLAHVEKVETVSSDGEGVGGVATAPASGSAASPDYEFNVWTRPDCAETEYENG
NRSWFYFSVRGGTPGKLIKINIMNMNKQSKLYSQGMAPFVRTLPSRPRWERIRERPTFEMTETQFVLSFV
HRFVEGRGATTFFAFCYPFSYSDCQDLLSQLDQRFSENYSTHSSPLDSIYYHRELLCYSLDGLRVDLLTI
TSCHGLRDDREPRLEQLFPDLGTPRPFRFTGKRIFFLSSRVHPGETPSSFVFNGFLDFILRPDDPRAQTL
RRLFVFKLIPMLNPDGVVRGHYRTDSRGVNLNRQYLKPDAVLHPAIYGAKAVLLYHHVHSRLNAKSPTNQ
QPTLHLPPEAPLSDLEKANNLHNEAHLGQSPDGENPATWPETEPAEEKTDPVWLMPQPIPELEEPAPDTI
PPKESGVAYYVDLHGHASKRGCFMYGNSFSDESTQVENMLYPKLISLNSAHFDFQGCNFSEKNMYARDRR
DGQSKEGSGRVAIYKASGIIHSYTLECNYNTGRSVNSIPAACHDNGRASPPPPPAFPSRYTVELFEQVGR
AMAIAALDMAECNPWPRIVLSEHSSLTNLRAWMLRHVRNSRGLTSAGNMGASKKRGARTPPKSNNSLPVS
CSENALSRVRSFSTGTSTGGSSSSQQNSPQMKNSPSFPFHGSRTAGLPGLGSSTQKVSHRVLGPVRGKPV
WEPLQQVFGCLGHCWGERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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