NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1910.1 Public Homo sapiens 2 CLEC4F 24 110 108 CCDS HistoryNCBI Gene:165530Re-query CCDS DB by CCDS ID:1910.1Re-query CCDS DB by GeneID:165530See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1910.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272367.7 ENSP00000272367.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272367.7Link to Ensembl Protein Viewer:ENSP00000272367.2Re-query CCDS DB by Nucleotide ID:ENST00000272367Re-query CCDS DB by Protein ID:ENSP00000272367
Original member Current member NCBI NM_173535.3 NP_775806.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173535.3Link to Protein Sequence:NP_775806.2Re-query CCDS DB by Nucleotide ID:NM_173535Re-query CCDS DB by Protein ID:NP_775806Link to BLAST:NP_775806.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775806.2 589 Q8N1N0-1 589 100% 0 0

Chromosomal Locations for CCDS 1910.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 70809271 70809382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70809739 70809857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70812447 70812598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70815994 70817112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70819355 70819444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70819775 70819891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70820463 70820523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGGACGGTGAGGCAGTCCGCTTCTGCACAGATAACCAGTGTGTCTCCCTGCACCCCCAAGAGGTGGACT
CTGTGGCAATGGCTCCTGCAGCCCCCAAGATACCGAGGCTCGTTCAGGCTACCCCGGCATTTATGGCTGT
GACCTTGGTCTTCTCTCTTGTGACTCTCTTTGTAGTGGTTCAACAGCAGACAAGACCTGTTCCGAAGCCT
GTGCAAGCCGTAATTCTGGGAGACAACATTACTGGGCATTTACCTTTTGAACCCAACAATCATCACCACT
TTGGCAGGGAGGCAGAAATGCGAGAGCTTATCCAGACATTTAAAGGCCACATGGAGAATTCCAGTGCCTG
GGTAGTAGAAATCCAGATGTTGAAGTGCAGAGTGGACAATGTCAATTCGCAGCTCCAGGTGCTCGGTGAT
CATCTGGGAAACACCAATGCTGACATCCAGATGGTAAAAGGAGTTCTAAAGGATGCCACTACATTGAGTT
TGCAGACACAGATGTTAAGGAGTTCCCTGGAGGGAACCAATGCTGAGATCCAGAGGCTCAAGGAAGACCT
TGAAAAGGCAGATGCTTTAACTTTCCAGACGCTGAATTTCTTAAAAAGCAGTTTAGAAAACACCAGCATT
GAGCTCCACGTGCTAAGCAGAGGCTTAGAAAATGCAAACTCTGAAATTCAGATGTTGAATGCCAGTTTGG
AAACGGCAAATACCCAGGCTCAGTTAGCCAATAGCAGTTTAAAGAACGCTAATGCTGAGATCTATGTTTT
GAGAGGCCATCTAGATAGTGTCAATGACTTGAGGACCCAGAACCAGGTTTTAAGAAATAGTTTGGAAGGA
GCCAATGCTGAGATCCAGGGACTAAAGGAAAATTTGCAGAACACAAATGCTTTAAACTCCCAGACCCAGG
CCTTTATAAAAAGCAGTTTTGACAACACTAGTGCTGAGATCCAGTTCTTAAGAGGTCATTTGGAAAGAGC
TGGTGATGAAATTCACGTGTTAAAAAGGGATTTGAAAATGGTCACAGCCCAGACCCAAAAAGCAAATGGC
CGTCTGGACCAGACAGATACTCAGATTCAGGTATTCAAGTCAGAGATGGAAAATGTGAATACCTTAAATG
CCCAGATTCAGGTCTTAAATGGTCATATGAAAAATGCCAGCAGAGAGATACAGACCCTAAAACAAGGAAT
GAAGAATGCTTCAGCCTTAACTTCCCAGACCCAGATGTTAGACAGCAATCTGCAGAAGGCCAGTGCCGAG
ATCCAGAGGTTAAGAGGGGATCTAGAGAACACCAAAGCTCTAACCATGGAAATCCAGCAGGAGCAGAGTC
GCCTGAAGACCCTCCATGTGGTCATTACTTCACAGGAACAGCTACAAAGAACCCAAAGTCAGCTTCTCCA
GATGGTCCTGCAAGGCTGGAAGTTCAATGGTGGAAGCTTATATTATTTTTCTAGTGTCAAGAAGTCTTGG
CATGAGGCTGAGCAGTTCTGCGTGTCCCAGGGAGCCCATCTGGCATCTGTGGCCTCCAAGGAGGAGCAGG
CATTTCTGGTAGAGTTCACAAGTAAAGTGTACTACTGGATCGGTCTCACTGACAGGGGCACAGAGGGCTC
CTGGCGCTGGACAGATGGGACACCATTCAACGCCGCCCAGAACAAAGCGCCTGGTTCCAAGGGATCCTGC
CCACTCAGAAAGTATATTATTGTGAATTCTGGGATGGGAGCTTGCAGCTTCATAGACACCCCTCCCTGTC
CCTGGATCCTCAGTAACTAA

Translation (589 aa):
MDGEAVRFCTDNQCVSLHPQEVDSVAMAPAAPKIPRLVQATPAFMAVTLVFSLVTLFVVVQQQTRPVPKP
VQAVILGDNITGHLPFEPNNHHHFGREAEMRELIQTFKGHMENSSAWVVEIQMLKCRVDNVNSQLQVLGD
HLGNTNADIQMVKGVLKDATTLSLQTQMLRSSLEGTNAEIQRLKEDLEKADALTFQTLNFLKSSLENTSI
ELHVLSRGLENANSEIQMLNASLETANTQAQLANSSLKNANAEIYVLRGHLDSVNDLRTQNQVLRNSLEG
ANAEIQGLKENLQNTNALNSQTQAFIKSSFDNTSAEIQFLRGHLERAGDEIHVLKRDLKMVTAQTQKANG
RLDQTDTQIQVFKSEMENVNTLNAQIQVLNGHMKNASREIQTLKQGMKNASALTSQTQMLDSNLQKASAE
IQRLRGDLENTKALTMEIQQEQSRLKTLHVVITSQEQLQRTQSQLLQMVLQGWKFNGGSLYYFSSVKKSW
HEAEQFCVSQGAHLASVASKEEQAFLVEFTSKVYYWIGLTDRGTEGSWRWTDGTPFNAAQNKAPGSKGSC
PLRKYIIVNSGMGACSFIDTPPCPWILSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH