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Report for CCDS19054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19054.1 Public Mus musculus 4 Sdf4 23 108 98 CCDS HistoryNCBI Gene:20318Re-query CCDS DB by CCDS ID:19054.1Re-query CCDS DB by GeneID:20318See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19054.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050078.12 ENSMUSP00000053175.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050078.12Link to Ensembl Protein Viewer:ENSMUSP00000053175.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050078Re-query CCDS DB by Protein ID:ENSMUSP00000053175
Original member Current member EBI ENSMUST00000105578.1 ENSMUSP00000101203.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105578.1Link to Ensembl Protein Viewer:ENSMUSP00000101203.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105578Re-query CCDS DB by Protein ID:ENSMUSP00000101203
Original member Current member EBI ENSMUST00000105579.7 ENSMUSP00000101204.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105579.7Link to Ensembl Protein Viewer:ENSMUSP00000101204.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105579Re-query CCDS DB by Protein ID:ENSMUSP00000101204
Original member Current member NCBI NM_001302467.1 NP_001289396.1 Accepted alive Link to Nucleotide Sequence:NM_001302467.1Link to Protein Sequence:NP_001289396.1Re-query CCDS DB by Nucleotide ID:NM_001302467Re-query CCDS DB by Protein ID:NP_001289396Link to BLAST:NP_001289396.1
Original member Current member NCBI NM_001302468.1 NP_001289397.1 Accepted alive Link to Nucleotide Sequence:NM_001302468.1Link to Protein Sequence:NP_001289397.1Re-query CCDS DB by Nucleotide ID:NM_001302468Re-query CCDS DB by Protein ID:NP_001289397Link to BLAST:NP_001289397.1
Original member Current member NCBI NM_011341.5 NP_035471.1 Accepted alive Link to Nucleotide Sequence:NM_011341.5Link to Protein Sequence:NP_035471.1Re-query CCDS DB by Nucleotide ID:NM_011341Re-query CCDS DB by Protein ID:NP_035471Link to BLAST:NP_035471.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289396.1 361 Q61112-1 361 100% 0 0
NP_001289397.1 361 Q61112-1 361 100% 0 0
NP_035471.1 361 Q61112-1 361 100% 0 0

Chromosomal Locations for CCDS 19054.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155996196 155996518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155999398 155999534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156000670 156000783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156008787 156008945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156009144 156009319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 156009774 156009950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGTCTGGCTGGTGGCAATGACGCCCAGGCAGAGTTCCCTCTGTGGTCTAGCTGCTCATGGCCTCTGGT
TCTTGGGCCTTGTCCTTCTGATGGATGCAACCGCTAGACCTGCCAACCACTCATCTACTCGGGAAAGAGC
GGCTAACAGGGAGGAAAATGAGATCATGCCCCCAGACCACCTGAATGGGGTGAAGCTGGAGATGGATGGA
CACCTCAACAAGGACTTCCATCAGGAGGTTTTCCTGGGAAAGGACATGGATGGGTTTGATGAAGACTCAG
AGCCACGGAGAAGCCGGAGGAAGCTGATGGTCATCTTTTCCAAGGTAGACGTGAACACTGACCGGAGGAT
CAGCGCTAAGGAGATGCAGCACTGGATTATGGAGAAAACAGCAGAGCACTTCCAGGAGGCCGTCAAGGAA
AACAAACTGCACTTCAGGGCTGTGGACCCTGACGGTGACGGCCATGTTTCCTGGGATGAATATAAAGTGA
AGTTTTTGGCAAGCAAAGGCCACAATGAAAGGGAGATTGCTGAAGCCATCAAGAACCATGAGGAGCTCAA
AGTGGATGAGGAGACACAGGAAGTCCTTGGGAACCTCAGAGACCGATGGTATCAGGCAGACAATCCTCCT
GCAGACCTGCTGCTGACTGAGGACGAGTTCCTTTCATTCCTTCACCCTGAGCACAGCCGGGGCATGCTCA
AGTTCATGGTCAAGGAGATCTTTCGGGACTTGGATCAGGATGGTGATAAGCAGTTATCTCTGCCCGAGTT
CATCTCTCTGCCTGTGGGTACTGTTGAGAACCAACAAGGCCAAGACATTGATGACAACTGGGTGAAAGAC
AGAAAGAAGGAGTTTGAGGAACTGATTGACTCTAACCATGATGGGATTGTGACCATGGAGGAGCTAGAGA
ACTACATGGACCCCATGAATGAATACAATGCCCTCAACGAAGCCAAACAGATGATTGCCATTGCTGATGA
GAACCAGAACCACCACCTGGAGCCCGAGGAGATCCTCAAGTACAGTGAGTTCTTCACCGGCAGCAAGCTC
ATGGACTATGCCCGCAACGTGCATGAAGAGTTCTGA

Translation (361 aa):
MVWLVAMTPRQSSLCGLAAHGLWFLGLVLLMDATARPANHSSTRERAANREENEIMPPDHLNGVKLEMDG
HLNKDFHQEVFLGKDMDGFDEDSEPRRSRRKLMVIFSKVDVNTDRRISAKEMQHWIMEKTAEHFQEAVKE
NKLHFRAVDPDGDGHVSWDEYKVKFLASKGHNEREIAEAIKNHEELKVDEETQEVLGNLRDRWYQADNPP
ADLLLTEDEFLSFLHPEHSRGMLKFMVKEIFRDLDQDGDKQLSLPEFISLPVGTVENQQGQDIDDNWVKD
RKKEFEELIDSNHDGIVTMEELENYMDPMNEYNALNEAKQMIAIADENQNHHLEPEEILKYSEFFTGSKL
MDYARNVHEEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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