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Report for CCDS18990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18990.1 Public Mus musculus 4 Espn 23 108 98 CCDS HistoryNCBI Gene:56226Re-query CCDS DB by CCDS ID:18990.1Re-query CCDS DB by GeneID:56226See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084114.11 ENSMUSP00000081131.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084114.11Link to Ensembl Protein Viewer:ENSMUSP00000081131.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084114Re-query CCDS DB by Protein ID:ENSMUSP00000081131
Original member Current member NCBI NM_207688.2 NP_997571.1 Accepted alive Link to Nucleotide Sequence:NM_207688.2Link to Protein Sequence:NP_997571.1Re-query CCDS DB by Nucleotide ID:NM_207688Re-query CCDS DB by Protein ID:NP_997571Link to BLAST:NP_997571.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997571.1 533 Q9ET47-3 533 100% 0 0

Chromosomal Locations for CCDS 18990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152121121 152121265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152123617 152123628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152123714 152123793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152128069 152128332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152128408 152128553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152129612 152129638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152130769 152130961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152131052 152131294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152134161 152134441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152135473 152135674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152136274 152136282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGGCAATAGCTTGGAACACCGAGTCTTGTCCCGGGATCAATCCATGGACCTGGAGGCAAAGCAGCTGG
ACTCGGGTATGTCCTCGCCCAACACCACCATGTCGGTCCAGCCAATGACCTTTGACCTGGGCTCGCCTAC
TAGCACGTTCTCCAACTATGACTCCTGCTCCTCCAGTCACTCCAGCAGCAAGGGGCAGCGATCGAATCGA
GGGATTCCAGGTGCAAGAGCTGCAGACTTACAGAGCTACATGGACATGCTGAACCCAGAGAAGAGCTTGC
CTCGGGGCAAGCTAGGGAAGCCTTCCCCGCCACCACCTCCACCACCACCACCACCAAGCTTCCCGCCACC
CCCACCACCCACAGGCACCCAGCCGCCCCCACCTCCACCAGGCTACCCAGCTCCCAATCCCCCTGTGGGA
CTGCATCTGAATAACATTTACATGCAGACCAAGAACAAGCTTCGCCATGTGGAGGTGGACTCGCTCAAGG
AGCCGAGCTCGGGCGACGGCCACTCGGGGCTACACAGGCAGGACTCCGGGCTGCTCAGGCAGGATTCGGA
GCTGCTGCACAGGCAGGAGCTGCTCAGGCACAGCACCGGACTGCGCAGGCAGGACTCCGACCGCAAACAG
CGCTCGTTCAGTAAACAGCCCAGCACGGGGGACTACTACCGCCAGCTGGGCCGCAGCCCGGGGGAGCCGC
TGGCCGCACGCCCGGGCATGGCCCACAGCGAGGAGGCGGCGCTGCTCCCCGGGAACCACGTGCACAACGG
CTGCTCAGCGGACTCCAAAGCGTCCAGGGAGCTGCCGCCGCCACCGCCGCCGCCGCCGCTGCCCGAGGCC
CTGAGTTCGCCGCCGCCCGCCCCACCTCTGCCCATCGAGGGCGCGGGCGCAGCCTGCGGGCAGCGTCGTT
CCTCGTCTTCTACTGGCAAAGTGAGAGTCCTGAGACACAGGAAGAGCACCAAATCTTTCAACATGATGTC
CCCAACGGGTGATAACTCAGAGCTTCTGGCTGAGATAAAGGCGGGCAAGAGCCTGAAGCCGACACCGCAG
AGCAAGGGGCTGACAACCGTGTTCTCAGGCAGTGGGCAGCCAGCCTCCCAGCCTGAGTCACCGCAGCCTC
TGGTGTCACCTGCGCCATCTCGGACTCGGAGCCCCACCCCGCCAGCCTCTGGGTCTCAGCCACTGCTCAA
TGGCAGTGTGGTGCCGGCACCACCTGCCACCCCGGCACCTGGAGTCCATCTGGATGTGGAGGCCCTCATT
CCCACTCTTGATGAGCAGGGCCGGCCCATCCCGGAGTGGAAGCGCCAGGTGATGGTCCGCAAGCTGCAGC
AGAAGATGCAGGAGGAAGAGGAGCAGCGGAGGAAGGAGGAAGAGGAGGAGGCCCGGCTCGCCAGCCTGCC
TGCCTGGAGACGAGACATTCTTCGGAAGAAGCTGGAGGAGGAGAGGGAGCAGAAGCGAAAAGAGGAGGAG
CGGCAAAAGCTGGAGGAAATACAGAGGGCGAAAGAACAGTCGGAGAAGCTGCGGACACTAGGCTACGACG
AAGCCAAGCTCGCGCCCTGGCAGCGACAGGTCATCTTGAAGAAGGGGGAGATCCCTAAGTAA

Translation (533 aa):
MGNSLEHRVLSRDQSMDLEAKQLDSGMSSPNTTMSVQPMTFDLGSPTSTFSNYDSCSSSHSSSKGQRSNR
GIPGARAADLQSYMDMLNPEKSLPRGKLGKPSPPPPPPPPPPSFPPPPPPTGTQPPPPPPGYPAPNPPVG
LHLNNIYMQTKNKLRHVEVDSLKEPSSGDGHSGLHRQDSGLLRQDSELLHRQELLRHSTGLRRQDSDRKQ
RSFSKQPSTGDYYRQLGRSPGEPLAARPGMAHSEEAALLPGNHVHNGCSADSKASRELPPPPPPPPLPEA
LSSPPPAPPLPIEGAGAACGQRRSSSSTGKVRVLRHRKSTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQ
SKGLTTVFSGSGQPASQPESPQPLVSPAPSRTRSPTPPASGSQPLLNGSVVPAPPATPAPGVHLDVEALI
PTLDEQGRPIPEWKRQVMVRKLQQKMQEEEEQRRKEEEEEARLASLPAWRRDILRKKLEEEREQKRKEEE
RQKLEEIQRAKEQSEKLRTLGYDEAKLAPWQRQVILKKGEIPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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